COG0050


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0050, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Translation elongation factor EF-Tu, a GTPase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0050 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_169 FBDBKF_17540 18 749 1 tuf elongation factor Tu Morganella morganii S1
1 group_169 EHELCC_19980 199 336 1 hypothetical protein Morganella morganii S2
2 group_169 NLDBIP_19970 3 140 -1 hypothetical protein Morganella morganii S4
3 group_169 LHKJJB_19935 3 140 -1 hypothetical protein Morganella morganii S3
4 group_169 HKOGLL_19750 199 336 1 hypothetical protein Morganella morganii S5
5 group_169 F4V73_RS14925 218124 219308 1 tuf elongation factor Tu Morganella psychrotolerans
6 group_169 F4V73_RS18900 4447 5631 1 tuf elongation factor Tu Morganella psychrotolerans
7 group_169 PMI_RS13790 3065932 3067116 -1 tuf elongation factor Tu Proteus mirabilis HI4320
8 group_169 PMI_RS16130 3579887 3581071 1 tuf elongation factor Tu Proteus mirabilis HI4320