Orthogroup:group_9


Homologs in group_9

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19 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10535 FBDBKF_10535 Morganella morganii S1 metC Cystathionine beta-lyase/cystathionine gamma-synthase
FBDBKF_12215 FBDBKF_12215 Morganella morganii S1 metB cystathionine gamma-synthase
FBDBKF_17600 FBDBKF_17600 Morganella morganii S1 metC Cystathionine beta-lyase/cystathionine gamma-synthase
EHELCC_14090 EHELCC_14090 Morganella morganii S2 metB cystathionine gamma-synthase
EHELCC_14870 EHELCC_14870 Morganella morganii S2 metC Cystathionine beta-lyase/cystathionine gamma-synthase
EHELCC_18085 EHELCC_18085 Morganella morganii S2 metC Cystathionine beta-lyase/cystathionine gamma-synthase
NLDBIP_14700 NLDBIP_14700 Morganella morganii S4 metC Cystathionine beta-lyase/cystathionine gamma-synthase
NLDBIP_15185 NLDBIP_15185 Morganella morganii S4 metB cystathionine gamma-synthase
NLDBIP_18065 NLDBIP_18065 Morganella morganii S4 metC Cystathionine beta-lyase/cystathionine gamma-synthase
LHKJJB_14645 LHKJJB_14645 Morganella morganii S3 metC Cystathionine beta-lyase/cystathionine gamma-synthase
LHKJJB_15425 LHKJJB_15425 Morganella morganii S3 metB cystathionine gamma-synthase
LHKJJB_18260 LHKJJB_18260 Morganella morganii S3 metC Cystathionine beta-lyase/cystathionine gamma-synthase
HKOGLL_13265 HKOGLL_13265 Morganella morganii S5 metC Cystathionine beta-lyase/cystathionine gamma-synthase
HKOGLL_14545 HKOGLL_14545 Morganella morganii S5 metB cystathionine gamma-synthase
HKOGLL_17940 HKOGLL_17940 Morganella morganii S5 metC Cystathionine beta-lyase/cystathionine gamma-synthase
F4V73_RS14245 F4V73_RS14245 Morganella psychrotolerans - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
F4V73_RS14980 F4V73_RS14980 Morganella psychrotolerans - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
F4V73_RS17045 F4V73_RS17045 Morganella psychrotolerans metB cystathionine gamma-synthase
PMI_RS15940 PMI_RS15940 Proteus mirabilis HI4320 metB cystathionine gamma-synthase

Distribution of group_9 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_9 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_9

Orthogroup content: 19 members

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This page summarizes the annotation of all members of the orthologous group group_9.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 metC 10
2 metB 7
3 - 2

Product

# Product Occurence
1 Cystathionine beta-lyase/cystathionine gamma-synthase 10
2 cystathionine gamma-synthase 7
3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0626 19 E Amino acid transport and metabolism (E) Cystathionine beta-lyase/cystathionine gamma-synthase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01053 19 Cys/Met metabolism PLP-dependent enzyme

Annotations of the 89 SwissProt hits

Annotation Number of occurrences
Alanine racemase ungC 1
Alanine racemase ungC' 1
Canavanine gamma-lyase 2
Cystathionine beta-lyase 10
Cystathionine beta-lyase MetC 3
Cystathionine beta-lyase, chloroplastic 2
Cystathionine gamma-lyase 9
Cystathionine gamma-synthase 11
Cystathionine gamma-synthase 1, chloroplastic 1
Cystathionine gamma-synthase-like enzyme iboG1 1
Cystathionine gamma-synthase-like enzyme iboG2 1
Cystathionine gamma-synthase-like protein ankD 1
Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase 1
Histidinol-phosphate aminotransferase 3
Homocysteine synthase 2
Homocysteine/cysteine synthase 3
L-2-amino-4-chloropent-4-enoate dechlorinase/desaturase 1
L-alanine/L-glutamate racemase 2
L-methionine gamma-lyase 7
L-seryl-tRNA(Sec) selenium transferase 1
Methionine gamma-lyase 1
Mimosinase, chloroplastic 2
O-acetyl-L-homoserine sulfhydrylase 3
O-acetyl-L-homoserine sulfhydrylase 1 1
O-acetyl-L-homoserine sulfhydrylase 2 1
O-succinylhomoserine sulfhydrylase 3
Probable cystathionine gamma-synthase 1
Probable cystathionine gamma-synthase (Fragment) 1
Probable cystathionine gamma-synthase 2 1
Putative cystathionine beta-lyase 2
Putative cystathionine gamma-lyase 1
Putative cystathionine gamma-lyase 2 1
Putative cystathionine gamma-synthase YML082W 1
Sulfhydrylase FUB7 3
Sulfhydrylase-like protein lolC1 1
Sulfhydrylase-like protein lolC2 1
Uncharacterized trans-sulfuration enzyme C23A1.14c 1
Uncharacterized trans-sulfuration enzyme YHR112C 1

Protein length

Min length 381
Max length 390
Mean length (sd) 385.7 (3.7)
Median length 386.0

Protein length distribution