Orthogroup:group_404



Homologs in group_404

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16315 FBDBKF_16315 Morganella morganii S1 rfaD ADP-glyceromanno-heptose 6-epimerase
EHELCC_16350 EHELCC_16350 Morganella morganii S2 rfaD ADP-glyceromanno-heptose 6-epimerase
NLDBIP_16990 NLDBIP_16990 Morganella morganii S4 rfaD ADP-glyceromanno-heptose 6-epimerase
LHKJJB_16910 LHKJJB_16910 Morganella morganii S3 rfaD ADP-glyceromanno-heptose 6-epimerase
HKOGLL_16930 HKOGLL_16930 Morganella morganii S5 rfaD ADP-glyceromanno-heptose 6-epimerase
F4V73_RS17275 F4V73_RS17275 Morganella psychrotolerans rfaD ADP-glyceromanno-heptose 6-epimerase
PMI_RS05600 PMI_RS05600 Proteus mirabilis HI4320 - SDR family oxidoreductase
PMI_RS15705 PMI_RS15705 Proteus mirabilis HI4320 rfaD ADP-glyceromanno-heptose 6-epimerase

Distribution of group_404 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_404 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_404

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_404.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rfaD 7
2 - 1

Product

# Product Occurence
1 ADP-glyceromanno-heptose 6-epimerase 7
2 SDR family oxidoreductase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0451 7 M Cell wall/membrane/envelope biogenesis (M) Nucleoside-diphosphate-sugar epimerase
COG0702 1 R General function prediction only (R) Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03274 7 ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars
ADP-L-glycero-D-manno-heptose biosynthesis

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01370 7 NAD dependent epimerase/dehydratase family
PF13460 1 NAD(P)H-binding

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG000332 6 ADP-L-glycero-D-mannoheptose-6-epimerase VF0044 Immune modulation
VFG013409 1 ADP-L-glycero-D-mannoheptose-6-epimerase VF0044 Immune modulation

Annotations of the 307 SwissProt hits

Annotation Number of occurrences
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase 6
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2 1
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 6 1
3-beta-hydroxysteroid dehydrogenase 1
ADP-L-glycero-D-manno-heptose-6-epimerase 158
Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 2
Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3 1
Bifunctional protein GAL10 3
Bifunctional protein gal10 1
Ceramide reductase 1
D-erythronate dehydrogenase 2
Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic 5
GDP-6-deoxy-D-mannose reductase 1
GDP-D-glycero-alpha-D-manno-heptose dehydrogenase 1
GDP-mannose 3,5-epimerase 1
GDP-mannose 3,5-epimerase 1 2
GDP-mannose 3,5-epimerase 2 1
Isoeugenol synthase 1 1
Isoflavone reductase homolog A622 3
Isoflavone reductase homolog A622-like 1
Isoflavone reductase homolog P3 1
Low-salt glycan biosynthesis protein Agl12 1
N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol 4-epimerase 1
NAD(P)H azoreductase 1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial 1
NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial 1
Phenylcoumaran benzylic ether reductase POP1 1
Phenylcoumaran benzylic ether reductase PT1 1
Phenylcoumaran benzylic ether reductase Pyrc5 1
Photosystem II assembly factor Ycf39 7
Polyketide synthase-nonribosomal peptide synthetase ffsA 1
Polyketide synthase-nonribosomal peptide synthetase pyiS 1
Probable UDP-arabinose 4-epimerase 1 1
Probable UDP-arabinose 4-epimerase 2 1
Probable UDP-arabinose 4-epimerase 3 2
Probable low-salt glycan biosynthesis reductase Agl14 1
Protein CapI 1
Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic 1
Protein TIC 62, chloroplastic 3
Putative NAD(P)-binding protein YbjT 1
Putative UDP-arabinose 4-epimerase 2 1
Putative UDP-arabinose 4-epimerase 4 1
Putative UDP-glucose 4-epimerase 1
Sanguinarine reductase 1
Short-chain dehydrogenase/reductase family 42E member 1 1
Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 1
Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 1
Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 1
UDP-N-acetylglucosamine 4-epimerase 1
UDP-arabinose 4-epimerase 1 1
UDP-glucose 4-epimerase 33
UDP-glucose 4-epimerase 1 1
UDP-glucose 4-epimerase 2 2
UDP-glucose 4-epimerase 3 1
UDP-glucose 4-epimerase 4 2
UDP-glucose 4-epimerase 5 1
UDP-glucose 4-epimerase GEPI42 1
UDP-glucose 4-epimerase GEPI48 1
UDP-glucuronate 4-epimerase 1
UDP-glucuronate 4-epimerase 1 1
UDP-glucuronate 4-epimerase 2 1
UDP-glucuronate 4-epimerase 3 1
UDP-glucuronate 4-epimerase 4 1
UDP-glucuronate 4-epimerase 6 1
UDP-glucuronic acid decarboxylase 1 7
UDP-glucuronic acid decarboxylase 2 1
UDP-glucuronic acid decarboxylase 4 1
UDP-glucuronic acid decarboxylase 6 1
Uncharacterized 37.6 kDa protein in cld 5'region 1
Uncharacterized UDP-glucose epimerase YtcB 1
Uncharacterized protein At2g34460, chloroplastic 1
Uncharacterized protein At2g37660, chloroplastic 1
Uncharacterized protein At5g02240 1
Uncharacterized protein MJ1055 1
Uncharacterized sugar epimerase YhfK 1
Vi polysaccharide biosynthesis protein VipB/TviC 1
dTDP-4-dehydro-6-deoxyglucose reductase 1
dTDP-4-keto-6-deoxy-D-glucose reductase 1
dTDP-D-glucose 4,6-dehydratase 4
dTDP-glucose 4,6-dehydratase 3

Protein length

Min length 287
Max length 312
Mean length (sd) 308.9 (8.8)
Median length 312.0

Protein length distribution