Orthogroup:group_3904



Homologs in group_3904

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS10485 PMI_RS10485 Proteus mirabilis HI4320 - chondroitinase family polysaccharide lyase
PMI_RS10490 PMI_RS10490 Proteus mirabilis HI4320 - chondroitinase family polysaccharide lyase

Distribution of group_3904 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of the RefSeq best hits of group_3904

Orthogroup content: 2 members

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This page summarizes the annotation of all members of the orthologous group group_3904.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 2

Product

# Product Occurence
1 chondroitinase family polysaccharide lyase 2

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K08961 2 chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02278 2 Polysaccharide lyase family 8, super-sandwich domain
PF02884 2 Polysaccharide lyase family 8, C-terminal beta-sandwich domain
PF09092 2 Lyase, N terminal
PF09093 2 Lyase, catalytic

Annotations of the 7 SwissProt hits

Annotation Number of occurrences
Chondroitin sulfate ABC endolyase 1
Chondroitin sulfate ABC exolyase 2
Chondroitin sulfate ABC exolyase (Fragment) 1
Chondroitinase-AC 1
Hyaluronate lyase 1
Xanthan lyase 1

Protein length

Min length 1013
Max length 1021
Mean length (sd) 1017.0 (5.7)
Median length 1017.0

Protein length distribution