Orthogroup:group_38


Homologs in group_38

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00315 FBDBKF_00315 Morganella morganii S1 - Single-stranded DNA-binding protein
FBDBKF_17025 FBDBKF_17025 Morganella morganii S1 ssb Single-stranded DNA-binding protein
EHELCC_01230 EHELCC_01230 Morganella morganii S2 - Single-stranded DNA-binding protein
EHELCC_16565 EHELCC_16565 Morganella morganii S2 ssb Single-stranded DNA-binding protein
NLDBIP_02230 NLDBIP_02230 Morganella morganii S4 - Single-stranded DNA-binding protein
NLDBIP_16775 NLDBIP_16775 Morganella morganii S4 ssb Single-stranded DNA-binding protein
LHKJJB_03745 LHKJJB_03745 Morganella morganii S3 - Single-stranded DNA-binding protein
LHKJJB_16695 LHKJJB_16695 Morganella morganii S3 ssb Single-stranded DNA-binding protein
HKOGLL_03300 HKOGLL_03300 Morganella morganii S5 - Single-stranded DNA-binding protein
HKOGLL_17660 HKOGLL_17660 Morganella morganii S5 ssb Single-stranded DNA-binding protein
F4V73_RS18505 F4V73_RS18505 Morganella psychrotolerans - single-stranded DNA-binding protein
PMI_RS04420 PMI_RS04420 Proteus mirabilis HI4320 ssb single-stranded DNA-binding protein
PMI_RS12105 PMI_RS12105 Proteus mirabilis HI4320 ssb single-stranded DNA-binding protein
PMI_RS13540 PMI_RS13540 Proteus mirabilis HI4320 ssb1 single-stranded DNA-binding protein SSB1

Distribution of group_38 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_38 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_38

Orthogroup content: 14 members

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This page summarizes the annotation of all members of the orthologous group group_38.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 6
2 ssb 7
3 ssb1 1

Product

# Product Occurence
1 Single-stranded DNA-binding protein 10
2 single-stranded DNA-binding protein 3
3 single-stranded DNA-binding protein SSB1 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0629 14 L Replication, recombination and repair (L) Single-stranded DNA-binding protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03111 14 single-strand DNA-binding protein DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00436 14 Single-strand binding protein family

Annotations of the 170 SwissProt hits

Annotation Number of occurrences
Plasmid-derived single-stranded DNA-binding protein 5
Single-stranded DNA-binding protein 106
Single-stranded DNA-binding protein 1 21
Single-stranded DNA-binding protein 1-A, mitochondrial 1
Single-stranded DNA-binding protein 1-B, mitochondrial 1
Single-stranded DNA-binding protein 2 19
Single-stranded DNA-binding protein 3 3
Single-stranded DNA-binding protein 4 1
Single-stranded DNA-binding protein A 1
Single-stranded DNA-binding protein B 1
Single-stranded DNA-binding protein, mitochondrial 10
Thylakoid-associated single-stranded DNA-binding protein slr1034 1

Protein length

Min length 139
Max length 175
Mean length (sd) 163.1 (11.3)
Median length 168.5

Protein length distribution