Orthogroup:group_280


Homologs in group_280

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06075 FBDBKF_06075 Morganella morganii S1 xni flap endonuclease Xni
EHELCC_09120 EHELCC_09120 Morganella morganii S2 xni flap endonuclease Xni
NLDBIP_09500 NLDBIP_09500 Morganella morganii S4 xni flap endonuclease Xni
LHKJJB_08255 LHKJJB_08255 Morganella morganii S3 xni flap endonuclease Xni
HKOGLL_07805 HKOGLL_07805 Morganella morganii S5 xni flap endonuclease Xni
F4V73_RS15830 F4V73_RS15830 Morganella psychrotolerans xni flap endonuclease Xni
F4V73_RS17995 F4V73_RS17995 Morganella psychrotolerans - 5'-3' exonuclease H3TH domain-containing protein
PMI_RS11350 PMI_RS11350 Proteus mirabilis HI4320 xni flap endonuclease Xni

Distribution of group_280 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_280 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_280

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_280.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xni 7
2 - 1

Product

# Product Occurence
1 flap endonuclease Xni 7
2 5'-3' exonuclease H3TH domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0258 8 L Replication, recombination and repair (L) 5'-3' exonuclease Xni/ExoIX (flap endonuclease)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01146 7 protein Xni - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01367 8 5'-3' exonuclease, C-terminal SAM fold
PF02739 8 5'-3' exonuclease, N-terminal resolvase-like domain

Annotations of the 144 SwissProt hits

Annotation Number of occurrences
5'-3' exonuclease 13
DNA polymerase I 30
DNA polymerase I, thermostable 5
Flap endonuclease 1
Flap endonuclease 1 1
Flap endonuclease Xni 94

Protein length

Min length 249
Max length 314
Mean length (sd) 261.0 (21.6)
Median length 255.0

Protein length distribution