VFG042625


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG042625, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein fimbrial protein
VF ID VF1233
Category Adherence
Protein ID WP_004244923
Vf_category_id VFC0001

Occurence in the database

VFG042625 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_310 FBDBKF_09025 19299 19835 -1 fimA Pilin (type 1 fimbrial protein) Morganella morganii S1
1 group_310 EHELCC_10385 126269 126805 1 fimA Pilin (type 1 fimbrial protein) Morganella morganii S2
2 group_310 NLDBIP_10730 104540 105076 1 fimA Pilin (type 1 fimbrial protein) Morganella morganii S4
3 group_310 LHKJJB_10625 86452 86988 -1 fimA Pilin (type 1 fimbrial protein) Morganella morganii S3
4 group_310 HKOGLL_13685 19753 20289 -1 fimA Pilin (type 1 fimbrial protein) Morganella morganii S5
5 group_310 PMI_RS01295 315985 316530 1 fimbrial protein Proteus mirabilis HI4320