Homologs in group_310

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09025 FBDBKF_09025 56.6 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_10385 EHELCC_10385 56.6 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_10730 NLDBIP_10730 56.6 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_10625 LHKJJB_10625 56.6 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_13685 HKOGLL_13685 56.6 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)
F4V73_RS10945 F4V73_RS10945 56.5 Morganella psychrotolerans - fimbrial protein
PMI_RS01245 PMI_RS01245 51.4 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_310

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_310

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76500 1.69e-20 86 34 3 142 2 yfcQ Uncharacterized fimbrial-like protein YfcQ Escherichia coli (strain K12)
P76501 2.67e-19 83 36 3 133 2 yfcR Uncharacterized fimbrial-like protein YfcR Escherichia coli (strain K12)
P08408 2.81e-11 62 32 6 150 1 papF Fimbrial adapter PapF Escherichia coli
P42187 3.42e-11 62 32 6 150 1 prsF Minor fimbrial protein PrsF Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01295
Feature type CDS
Gene -
Product fimbrial protein
Location 315985 - 316530 (strand: 1)
Length 546 (nucleotides) / 181 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_310
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042625 fimbrial protein VF1233 Adherence

Protein Sequence

MVMEQWFSPSKAVLVFILATFTGGLSSTAVANLPAGAVIRATPGIVYINITGNVIAPPPCLINDGKMIEVNFGEVMSTRINDSNYKQPIEYTATCQKRPTNAMKVYITGNATGFDSNALQTNITGLGVRILYQGKLLGLGSAVKFTYPNLPKLEAIPVRDNRETLVGGDFVANATLHVDYQ

Flanking regions ( +/- flanking 50bp)

TCAATGCAAAGTAACAGAAACGGCAGCTGGAAACTAAATAGGTCTGATTTATGGTTATGGAACAGTGGTTTAGCCCAAGCAAGGCAGTGTTGGTTTTTATTCTGGCAACATTTACTGGAGGCCTGAGTTCTACTGCTGTTGCTAACTTACCTGCAGGAGCAGTAATAAGAGCGACCCCCGGGATTGTTTATATCAATATTACTGGAAACGTCATCGCTCCACCTCCTTGCTTAATCAATGACGGCAAGATGATCGAGGTGAATTTTGGCGAAGTAATGAGTACGCGTATTAATGATAGCAATTATAAGCAACCTATCGAATATACCGCGACTTGCCAAAAAAGACCGACTAACGCCATGAAAGTCTATATAACAGGTAATGCAACAGGGTTCGATAGTAATGCCCTACAAACTAATATTACGGGATTAGGGGTACGCATTCTTTATCAAGGTAAATTATTAGGATTAGGCTCAGCGGTTAAATTTACCTATCCCAATTTGCCTAAACTAGAAGCGATCCCTGTGCGTGATAATAGAGAAACACTAGTTGGTGGAGATTTTGTTGCCAATGCCACACTTCATGTAGATTATCAGTAAAGGGGCAACACGATGAATAAATTGCAATCTATTTGTCTGATTATATTACT