VFG044140


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG044140, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein outer membrane channel protein TolC
VF ID VF1029
Category Nutritional/Metabolic factor
Protein ID WP_002212186
Vf_category_id VFC0272

Occurence in the database

VFG044140 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_181 FBDBKF_06330 99891 101255 1 tolC outer membrane channel protein TolC Morganella morganii S1
1 group_181 EHELCC_09375 100463 101827 1 tolC outer membrane channel protein TolC Morganella morganii S2
2 group_181 NLDBIP_09755 100463 101827 1 tolC outer membrane channel protein TolC Morganella morganii S4
3 group_181 LHKJJB_08000 115411 116775 -1 tolC outer membrane channel protein TolC Morganella morganii S3
4 group_181 HKOGLL_07550 115411 116775 -1 tolC outer membrane channel protein TolC Morganella morganii S5
5 group_181 F4V73_RS15590 112830 114194 -1 tolC outer membrane channel protein TolC Morganella psychrotolerans
6 group_181 PMI_RS11620 2567373 2568770 1 tolC outer membrane channel protein TolC Proteus mirabilis HI4320