Orthogroup:group_2353


Homologs in group_2353

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18995 FBDBKF_18995 Morganella morganii S1 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
EHELCC_18740 EHELCC_18740 Morganella morganii S2 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
NLDBIP_18565 NLDBIP_18565 Morganella morganii S4 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LHKJJB_18610 LHKJJB_18610 Morganella morganii S3 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
HKOGLL_18345 HKOGLL_18345 Morganella morganii S5 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
F4V73_RS13905 F4V73_RS13905 Morganella psychrotolerans ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
PMI_RS11040 PMI_RS11040 Proteus mirabilis HI4320 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Distribution of group_2353 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2353 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2353

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2353.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispF 7

Product

# Product Occurence
1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 5
2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0245 7 I Lipid transport and metabolism (I) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01770 7 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Terpenoid backbone biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 C5 isoprenoid biosynthesis, non-mevalonate pathway

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02542 7 YgbB family

Annotations of the 504 SwissProt hits

Annotation Number of occurrences
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 407
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, apicoplast 2
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 3
Bifunctional enzyme IspD/IspF 92

Protein length

Min length 159
Max length 160
Mean length (sd) 159.9 (0.4)
Median length 160.0

Protein length distribution