Orthogroup:group_2154


Homologs in group_2154

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16215 FBDBKF_16215 Morganella morganii S1 rph ribonuclease PH
EHELCC_16250 EHELCC_16250 Morganella morganii S2 rph ribonuclease PH
NLDBIP_17090 NLDBIP_17090 Morganella morganii S4 rph ribonuclease PH
LHKJJB_17010 LHKJJB_17010 Morganella morganii S3 rph ribonuclease PH
HKOGLL_16830 HKOGLL_16830 Morganella morganii S5 rph ribonuclease PH
F4V73_RS17385 F4V73_RS17385 Morganella psychrotolerans rph ribonuclease PH
PMI_RS15580 PMI_RS15580 Proteus mirabilis HI4320 rph ribonuclease PH

Distribution of group_2154 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2154 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2154

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2154.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rph 7

Product

# Product Occurence
1 ribonuclease PH 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0689 7 J Translation, ribosomal structure and biogenesis (J) Ribonuclease PH

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00989 7 ribonuclease PH [EC:2.7.7.56] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01138 7 3' exoribonuclease family, domain 1
PF03725 7 3' exoribonuclease family, domain 2

Annotations of the 519 SwissProt hits

Annotation Number of occurrences
Exosome complex component RRP41 3
Exosome complex component RRP41 homolog 1
Exosome complex component Rrp41 24
Exosome complex component Rrp42 14
Polyribonucleotide nucleotidyltransferase 50
Polyribonucleotide nucleotidyltransferase 1 1
Polyribonucleotide nucleotidyltransferase 2 1
Polyribonucleotide nucleotidyltransferase 2, mitochondrial 2
Putative exosome complex component RRP41 2
Ribonuclease PH 420
Truncated inactive ribonuclease PH 1

Protein length

Min length 238
Max length 242
Mean length (sd) 241.4 (1.5)
Median length 242.0

Protein length distribution