Orthogroup:group_2078


Homologs in group_2078

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15545 FBDBKF_15545 Morganella morganii S1 gadA glutamate decarboxylase
EHELCC_15905 EHELCC_15905 Morganella morganii S2 gadA glutamate decarboxylase
NLDBIP_16465 NLDBIP_16465 Morganella morganii S4 gadA glutamate decarboxylase
LHKJJB_16340 LHKJJB_16340 Morganella morganii S3 gadA glutamate decarboxylase
HKOGLL_16110 HKOGLL_16110 Morganella morganii S5 gadA glutamate decarboxylase
F4V73_RS17605 F4V73_RS17605 Morganella psychrotolerans - glutamate decarboxylase
PMI_RS06805 PMI_RS06805 Proteus mirabilis HI4320 - glutamate decarboxylase

Distribution of group_2078 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2078 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2078

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2078.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 gadA 5
2 - 2

Product

# Product Occurence
1 glutamate decarboxylase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0076 7 E Amino acid transport and metabolism (E) Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00282 7 Pyridoxal-dependent decarboxylase conserved domain

Annotations of the 86 SwissProt hits

Annotation Number of occurrences
4-hydroxyphenylacetaldehyde synthase 1
Glutamate decarboxylase 6
Glutamate decarboxylase 1 1
Glutamate decarboxylase 2 1
Glutamate decarboxylase 3 1
Glutamate decarboxylase 4 1
Glutamate decarboxylase 5 1
Glutamate decarboxylase A 1
Glutamate decarboxylase B 1
Glutamate decarboxylase alpha 5
Glutamate decarboxylase beta 6
Histidine decarboxylase 11
L-aspartate decarboxylase 1
L-aspartate/L-glutamate decarboxylase 1
L-tryptophan decarboxylase cnsB 1
L-tyrosine/L-aspartate decarboxylase 1
Probable L-aspartate decarboxylase 8
Probable L-tyrosine/L-aspartate decarboxylase 20
Probable glutamate decarboxylase gamma 2
Probable sphingosine-1-phosphate lyase 3
Serine decarboxylase 1
Serine decarboxylase 3 1
Sphingosine-1-phosphate lyase 6
Sphingosine-1-phosphate lyase 1 4
Tryptophan decarboxylase 1

Protein length

Min length 460
Max length 463
Mean length (sd) 460.4 (1.1)
Median length 460.0

Protein length distribution