Orthogroup:group_1988


Homologs in group_1988

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14910 FBDBKF_14910 Morganella morganii S1 yejM LPS biosynthesis-modulating metalloenzyme YejM
EHELCC_15715 EHELCC_15715 Morganella morganii S2 yejM LPS biosynthesis-modulating metalloenzyme YejM
NLDBIP_16245 NLDBIP_16245 Morganella morganii S4 yejM LPS biosynthesis-modulating metalloenzyme YejM
LHKJJB_15595 LHKJJB_15595 Morganella morganii S3 yejM LPS biosynthesis-modulating metalloenzyme YejM
HKOGLL_14715 HKOGLL_14715 Morganella morganii S5 yejM LPS biosynthesis-modulating metalloenzyme YejM
F4V73_RS07710 F4V73_RS07710 Morganella psychrotolerans yejM LPS biosynthesis-modulating metalloenzyme YejM
PMI_RS04040 PMI_RS04040 Proteus mirabilis HI4320 yejM LPS biosynthesis-modulating metalloenzyme YejM

Distribution of group_1988 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1988 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1988

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1988.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yejM 7

Product

# Product Occurence
1 LPS biosynthesis-modulating metalloenzyme YejM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3083 7 MT Cell wall/membrane/envelope biogenesis (M)
Signal transduction mechanisms (T)		 Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07014 7 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00884 7 Sulfatase
PF11893 7 Domain of unknown function (DUF3413)

Annotations of the 7 SwissProt hits

Annotation Number of occurrences
Inner membrane protein YejM 5
Lipoteichoic acid synthase-like YqgS 1
Uncharacterized protein HI_0841 1

Protein length

Min length 577
Max length 589
Mean length (sd) 586.9 (4.5)
Median length 589.0

Protein length distribution