COG3134


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3134, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
Function(s) descr. Function unknown (S)

Occurence in the database

COG3134 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1951 FBDBKF_14645 28546 28983 -1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain Morganella morganii S1
1 group_1951 EHELCC_15450 58622 59059 -1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain Morganella morganii S2
2 group_1951 NLDBIP_15980 58622 59059 -1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain Morganella morganii S4
3 group_1951 LHKJJB_15860 57627 58064 1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain Morganella morganii S3
4 group_1951 HKOGLL_14980 56839 57276 1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain Morganella morganii S5
5 group_1951 F4V73_RS07440 1557016 1557357 -1 UmoD Morganella psychrotolerans
6 group_1951 PMI_RS04300 964662 965162 1 umoD flagellar biogenesis regulator UmoD Proteus mirabilis HI4320