Homologs in group_1951

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14645 FBDBKF_14645 77.9 Morganella morganii S1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
EHELCC_15450 EHELCC_15450 77.9 Morganella morganii S2 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
NLDBIP_15980 NLDBIP_15980 77.9 Morganella morganii S4 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
LHKJJB_15860 LHKJJB_15860 77.9 Morganella morganii S3 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
HKOGLL_14980 HKOGLL_14980 77.9 Morganella morganii S5 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
PMI_RS04300 PMI_RS04300 38.3 Proteus mirabilis HI4320 umoD flagellar biogenesis regulator UmoD

Distribution of the homologs in the orthogroup group_1951

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1951

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB37 8.32e-07 48 36 0 49 4 ycfJ Uncharacterized protein YcfJ Shigella flexneri
P0AB35 8.32e-07 48 36 0 49 4 ycfJ Uncharacterized protein YcfJ Escherichia coli (strain K12)
P0AB36 8.32e-07 48 36 0 49 4 ycfJ Uncharacterized protein YcfJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07440
Feature type CDS
Gene -
Product UmoD
Location 1557016 - 1557357 (strand: -1)
Length 342 (nucleotides) / 113 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1951
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3134 Function unknown (S) S Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain

Protein Sequence

MATVPVRHEYCDLIPMPGPFKPEHLDIIRPTSETCTPYLLYEMLLKPPRMYGGAAYRSCTEAFTYEHRIVGYDVVYKINNTVGKVRINYNPGDAMPVDNTGRLIILPGLSNGK

Flanking regions ( +/- flanking 50bp)

TAAAAAATAAACGCCCTGCTATTGCCGAGGTCCTGTCCTCTGAGGCGATTATGGCGACGGTACCTGTGCGCCATGAATACTGCGACCTGATACCGATGCCCGGGCCGTTTAAGCCTGAGCATCTGGATATTATCCGCCCGACGTCGGAAACCTGCACACCGTATCTGCTGTATGAAATGCTGCTTAAACCCCCGCGAATGTATGGCGGCGCGGCTTATCGCTCCTGCACTGAGGCCTTTACCTATGAGCACAGGATAGTCGGGTATGACGTGGTGTATAAGATTAATAATACTGTCGGTAAGGTCAGGATTAATTATAACCCCGGGGATGCGATGCCGGTTGATAACACAGGGCGCCTGATCATTTTACCCGGATTGAGCAACGGGAAATAAACTGCATAATAAACAAAAAAAAGAAAATACCGGTTTATATCATAAACCGG