Homologs in group_1951

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14645 FBDBKF_14645 40.2 Morganella morganii S1 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
EHELCC_15450 EHELCC_15450 40.2 Morganella morganii S2 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
NLDBIP_15980 NLDBIP_15980 40.2 Morganella morganii S4 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
LHKJJB_15860 LHKJJB_15860 40.2 Morganella morganii S3 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
HKOGLL_14980 HKOGLL_14980 40.2 Morganella morganii S5 ycfJ Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain
F4V73_RS07440 F4V73_RS07440 38.3 Morganella psychrotolerans - UmoD

Distribution of the homologs in the orthogroup group_1951

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1951

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB37 7.57e-10 58 26 5 161 4 ycfJ Uncharacterized protein YcfJ Shigella flexneri
P0AB35 7.57e-10 58 26 5 161 4 ycfJ Uncharacterized protein YcfJ Escherichia coli (strain K12)
P0AB36 7.57e-10 58 26 5 161 4 ycfJ Uncharacterized protein YcfJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04300
Feature type CDS
Gene umoD
Product flagellar biogenesis regulator UmoD
Location 964662 - 965162 (strand: 1)
Length 501 (nucleotides) / 166 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1951
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3134 Function unknown (S) S Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain

Protein Sequence

MSVDSKKFTLIGLILVLAILLFVAWKWIFPRPQFAHVVSATPIKSTVFVTEEYCHRIGLPTQFTPEKLSRFHPAEQECRVFYMIEALNNKSIAHFPYAQFRECIPIYRQERRVIGYDVLYTIDGTPGKVRTTFKPGDIIALDSDGRLVLEQEPYCSMNENIPCRKE

Flanking regions ( +/- flanking 50bp)

TATAACAAAAAAATAGTAAAATAGGGATAAACGCATAAAAAGGGGAAAAAGTGAGTGTTGATAGCAAAAAGTTCACACTAATAGGACTAATCCTTGTATTAGCTATTCTTTTATTTGTCGCTTGGAAGTGGATATTTCCACGGCCACAATTTGCCCATGTGGTTTCAGCAACACCGATTAAATCAACCGTTTTTGTGACAGAAGAGTATTGCCATCGTATTGGACTGCCTACACAATTTACACCAGAAAAATTATCGCGTTTTCATCCCGCAGAGCAAGAGTGCCGTGTTTTCTATATGATAGAAGCGCTAAACAATAAAAGTATTGCTCACTTCCCTTATGCTCAATTTAGAGAATGTATTCCCATTTACCGCCAAGAAAGGCGAGTTATCGGTTATGATGTGCTTTACACAATTGATGGTACACCGGGTAAAGTGAGAACGACATTTAAACCGGGCGATATCATCGCGCTAGATAGCGATGGCCGACTTGTTTTGGAGCAAGAGCCATATTGTTCTATGAATGAAAATATTCCTTGCCGTAAAGAGTAACGGTTTTCTTTTTAGCATTAACGCTGATAACTGATAAGATAAAAAAGGCC