Orthogroup:group_1884


Homologs in group_1884

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14085 FBDBKF_14085 Morganella morganii S1 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase
EHELCC_08195 EHELCC_08195 Morganella morganii S2 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase
NLDBIP_08520 NLDBIP_08520 Morganella morganii S4 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase
LHKJJB_05745 LHKJJB_05745 Morganella morganii S3 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase
HKOGLL_05170 HKOGLL_05170 Morganella morganii S5 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase
F4V73_RS02850 F4V73_RS02850 Morganella psychrotolerans menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase
PMI_RS08565 PMI_RS08565 Proteus mirabilis HI4320 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase

Distribution of group_1884 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1884 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1884

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1884.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 menD 7

Product

# Product Occurence
1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylic-acid synthase 5
2 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1165 7 H Coenzyme transport and metabolism (H) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02775 6 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
PF02776 7 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
PF16582 7 Middle domain of thiamine pyrophosphate

Annotations of the 272 SwissProt hits

Annotation Number of occurrences
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase 262
Acetolactate synthase (Fragment) 1
Acetolactate synthase 1, chloroplastic 3
Acetolactate synthase 2, chloroplastic 1
Acetolactate synthase 3, chloroplastic 1
Acetolactate synthase catalytic subunit, mitochondrial 2
Probable acetolactate synthase 2, chloroplastic 1
Protein PHYLLO, chloroplastic 1

Protein length

Min length 556
Max length 561
Mean length (sd) 556.7 (1.9)
Median length 556.0

Protein length distribution