COG4980


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4980, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Gas vesicle protein YhaH
Function(s) descr. General function prediction only (R)

Occurence in the database

COG4980 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1846 FBDBKF_13805 53620 54129 1 Late embryogenesis abundant protein Morganella morganii S1
1 group_1846 EHELCC_11475 138496 139005 1 Late embryogenesis abundant protein Morganella morganii S2
2 group_1846 NLDBIP_11820 138496 139005 1 Late embryogenesis abundant protein Morganella morganii S4
3 group_1846 LHKJJB_11680 138496 139005 1 Late embryogenesis abundant protein Morganella morganii S3
4 group_1846 HKOGLL_10290 138496 139005 1 Late embryogenesis abundant protein Morganella morganii S5
5 group_1846 F4V73_RS12670 131940 132476 1 hypothetical protein Morganella psychrotolerans