Orthogroup:group_1595


Homologs in group_1595

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10405 FBDBKF_10405 Morganella morganii S1 hofQ Type II secretory pathway, component HofQ
EHELCC_14740 EHELCC_14740 Morganella morganii S2 hofQ Type II secretory pathway, component HofQ
NLDBIP_14570 NLDBIP_14570 Morganella morganii S4 hofQ Type II secretory pathway, component HofQ
LHKJJB_14775 LHKJJB_14775 Morganella morganii S3 hofQ Type II secretory pathway, component HofQ
HKOGLL_13395 HKOGLL_13395 Morganella morganii S5 hofQ Type II secretory pathway, component HofQ
F4V73_RS14100 F4V73_RS14100 Morganella psychrotolerans - transporter
PMI_RS14965 PMI_RS14965 Proteus mirabilis HI4320 - competence protein E

Distribution of group_1595 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1595 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1595

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1595.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hofQ 5
2 - 2

Product

# Product Occurence
1 Type II secretory pathway, component HofQ 5
2 transporter 1
3 competence protein E 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4796 7 U Intracellular trafficking, secretion, and vesicular transport (U) Type II secretory pathway, component HofQ

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00263 7 Bacterial type II and III secretion system protein
PF03958 7 Bacterial type II/III secretion system short domain

Annotations of the 37 SwissProt hits

Annotation Number of occurrences
Competence protein E 1
DNA utilization protein HofQ 1
Fimbrial assembly protein PilQ 1
Probable type IV piliation system protein DR_0774 1
Putative assembly protein ORF430 1
Putative secretin GspD 1
SPI-1 type 3 secretion system secretin 1
SPI-2 type 3 secretion system secretin 1
Secretin ExeD 2
Secretin GspD 1
Secretin GspD 2 1
Secretin OutD 3
Secretin PulD 1
Secretin XcpQ 1
Secretin XpsD 1
Type 3 secretion system secretin 7
Type IV pilus biogenesis and competence protein PilQ 5
Uncharacterized protein y4xJ 1
Virion export protein 6

Protein length

Min length 353
Max length 371
Mean length (sd) 355.7 (6.8)
Median length 353.0

Protein length distribution