Orthogroup:group_1579


Homologs in group_1579

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10255 FBDBKF_10255 Morganella morganii S1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
EHELCC_14590 EHELCC_14590 Morganella morganii S2 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
NLDBIP_14420 NLDBIP_14420 Morganella morganii S4 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
LHKJJB_14925 LHKJJB_14925 Morganella morganii S3 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
HKOGLL_13545 HKOGLL_13545 Morganella morganii S5 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
F4V73_RS13970 F4V73_RS13970 Morganella psychrotolerans - nickel/cobalt transporter
PMI_RS07360 PMI_RS07360 Proteus mirabilis HI4320 - nickel/cobalt transporter

Distribution of group_1579 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1579 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1579

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1579.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rcnA 5
2 - 2

Product

# Product Occurence
1 ABC-type nickel/cobalt efflux system, permease component RcnA 5
2 nickel/cobalt transporter 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2215 7 P Inorganic ion transport and metabolism (P) ABC-type nickel/cobalt efflux system, permease component RcnA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K08970 7 nickel/cobalt transporter (NicO) family protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03824 7 High-affinity nickel-transport protein

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Putative nickel/cobalt efflux system HI_1248 1

Protein length

Min length 328
Max length 337
Mean length (sd) 330.0 (3.6)
Median length 328.0

Protein length distribution