Homologs in group_1530

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09880 FBDBKF_09880 61.9 Morganella morganii S1 seqA replication initiation negative regulator SeqA
EHELCC_04680 EHELCC_04680 61.9 Morganella morganii S2 seqA replication initiation negative regulator SeqA
NLDBIP_04680 NLDBIP_04680 61.9 Morganella morganii S4 seqA replication initiation negative regulator SeqA
LHKJJB_13950 LHKJJB_13950 61.9 Morganella morganii S3 seqA replication initiation negative regulator SeqA
HKOGLL_12585 HKOGLL_12585 61.9 Morganella morganii S5 seqA replication initiation negative regulator SeqA
F4V73_RS00470 F4V73_RS00470 62.1 Morganella psychrotolerans seqA replication initiation negative regulator SeqA

Distribution of the homologs in the orthogroup group_1530

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1530

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4ESN7 9.81e-136 379 100 0 183 3 seqA Negative modulator of initiation of replication Proteus mirabilis (strain HI4320)
A4W853 1.85e-81 242 63 3 184 3 seqA Negative modulator of initiation of replication Enterobacter sp. (strain 638)
Q7CQY1 7.12e-81 240 61 2 184 3 seqA Negative modulator of initiation of replication Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AFZ0 7.95e-81 240 60 2 184 3 seqA Negative modulator of initiation of replication Shigella flexneri
P0AFY8 7.95e-81 240 60 2 184 1 seqA Negative modulator of initiation of replication Escherichia coli (strain K12)
P0AFY9 7.95e-81 240 60 2 184 3 seqA Negative modulator of initiation of replication Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q32IN7 1.08e-78 235 59 2 184 3 seqA Negative modulator of initiation of replication Shigella dysenteriae serotype 1 (strain Sd197)
F2EP55 2.97e-75 226 59 3 188 3 seqA Negative modulator of initiation of replication Pantoea ananatis (strain AJ13355)
Q6LTC6 6.24e-60 187 52 3 183 3 seqA Negative modulator of initiation of replication Photobacterium profundum (strain SS9)
Q5E6N6 5.31e-56 177 50 4 186 3 seqA Negative modulator of initiation of replication Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9KQA4 6.08e-56 177 50 4 184 3 seqA Negative modulator of initiation of replication Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VI46 3.4e-55 175 48 4 185 3 seqA Negative modulator of initiation of replication Vibrio atlanticus (strain LGP32)
C4K392 7.82e-54 172 45 2 189 3 seqA Negative modulator of initiation of replication Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
P44564 4.51e-51 165 47 4 192 3 seqA Negative modulator of initiation of replication Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A6VMY4 6.07e-48 158 43 5 207 3 seqA Negative modulator of initiation of replication Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
E1W6L8 6.59e-48 158 43 4 210 3 seqA Negative modulator of initiation of replication Haemophilus parainfluenzae (strain T3T1)
A0KIH3 1.29e-47 155 48 4 185 3 seqA Negative modulator of initiation of replication Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
B8F412 1.4e-46 154 44 3 186 3 seqA Negative modulator of initiation of replication Glaesserella parasuis serovar 5 (strain SH0165)
Q65U90 1.88e-46 154 42 4 212 3 seqA Negative modulator of initiation of replication Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q7VLX4 1.27e-43 146 44 4 183 3 seqA Negative modulator of initiation of replication Haemophilus ducreyi (strain 35000HP / ATCC 700724)
C4LC10 7.58e-43 144 43 4 183 3 seqA Negative modulator of initiation of replication Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
Q15TS1 3.67e-39 134 40 3 181 3 seqA Negative modulator of initiation of replication Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q5QXP4 6.46e-36 125 40 4 179 3 seqA Negative modulator of initiation of replication Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q485E3 5.78e-34 122 39 5 197 3 seqA Negative modulator of initiation of replication Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
B0TUS0 2.25e-33 120 39 5 182 3 seqA Negative modulator of initiation of replication Shewanella halifaxensis (strain HAW-EB4)
E1SM51 2.61e-32 117 37 2 167 3 seqA Negative modulator of initiation of replication Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)
Q3IGV1 1.24e-30 113 36 5 194 3 seqA Negative modulator of initiation of replication Pseudoalteromonas translucida (strain TAC 125)
A1STA5 9.24e-30 111 35 4 203 3 seqA Negative modulator of initiation of replication Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q8EEP2 3.17e-29 109 38 4 165 3 seqA Negative modulator of initiation of replication Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A1S6A5 5.87e-28 106 37 4 174 3 seqA Negative modulator of initiation of replication Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q082Q5 8.67e-28 106 35 5 200 3 seqA Negative modulator of initiation of replication Shewanella frigidimarina (strain NCIMB 400)
B1KEH7 2.77e-27 104 33 4 188 3 seqA Negative modulator of initiation of replication Shewanella woodyi (strain ATCC 51908 / MS32)
Q12MQ7 1.74e-19 85 28 6 249 3 seqA Negative modulator of initiation of replication Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02695
Feature type CDS
Gene seqA
Product replication initiation negative regulator SeqA
Location 588863 - 589414 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1530
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03925 SeqA protein C-terminal domain
PF17206 SeqA protein N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3057 Replication, recombination and repair (L) L Negative regulator of replication initiation SeqA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03645 negative modulator of initiation of replication - -

Protein Sequence

MKKIEIDDELYRYIASETRHIGESASDILRRLLKLDAKQPVQPVVVTESVQAPVVKQDADLKPVAPAKNPVREMRELLLSDSYAEKTKSVDRFLQILSTLYSLDSATFTQSAETVHGRTRIYFAGDEKTLLDSGRHTKPRHIPGTPFWVITNSNTERKRTMVQSIMQDMQFPANEIDKVCGTI

Flanking regions ( +/- flanking 50bp)

TATATCTTATAATCCTAGTCACTTTTTTTTGAAAATAGTACTGGGTAGCAATGAAAAAGATAGAAATTGATGACGAACTTTACCGCTATATCGCTAGCGAAACTAGACATATCGGTGAAAGCGCTTCAGATATTTTAAGGCGTCTATTGAAGCTTGATGCCAAACAGCCCGTACAGCCAGTCGTTGTCACTGAGTCAGTACAAGCGCCTGTCGTTAAACAGGATGCTGATCTTAAGCCTGTCGCACCAGCAAAAAATCCGGTCCGTGAAATGCGTGAACTGCTGTTATCTGATAGTTATGCAGAGAAAACAAAATCAGTTGATCGTTTTTTACAGATCCTGTCTACATTATATAGCTTAGATAGTGCTACTTTTACTCAATCTGCTGAAACAGTACATGGACGCACGCGAATTTATTTTGCCGGTGATGAAAAAACATTGCTCGACAGTGGACGTCATACAAAACCTCGCCATATTCCCGGTACGCCATTTTGGGTTATTACCAACTCAAATACTGAGCGTAAAAGAACTATGGTACAAAGCATCATGCAGGATATGCAATTCCCTGCCAATGAGATTGATAAAGTGTGTGGAACTATCTAAACACTATTGTTAATTGATGCATTGCAAAGGCTTTCGTTTAAAGCATGATT