Homologs in group_1530

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09880 FBDBKF_09880 85.2 Morganella morganii S1 seqA replication initiation negative regulator SeqA
EHELCC_04680 EHELCC_04680 85.2 Morganella morganii S2 seqA replication initiation negative regulator SeqA
NLDBIP_04680 NLDBIP_04680 85.2 Morganella morganii S4 seqA replication initiation negative regulator SeqA
LHKJJB_13950 LHKJJB_13950 85.2 Morganella morganii S3 seqA replication initiation negative regulator SeqA
HKOGLL_12585 HKOGLL_12585 85.2 Morganella morganii S5 seqA replication initiation negative regulator SeqA
PMI_RS02695 PMI_RS02695 62.1 Proteus mirabilis HI4320 seqA replication initiation negative regulator SeqA

Distribution of the homologs in the orthogroup group_1530

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1530

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CQY1 6.32e-77 230 60 2 182 3 seqA Negative modulator of initiation of replication Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AFZ0 3.79e-75 226 59 4 187 3 seqA Negative modulator of initiation of replication Shigella flexneri
P0AFY8 3.79e-75 226 59 4 187 1 seqA Negative modulator of initiation of replication Escherichia coli (strain K12)
P0AFY9 3.79e-75 226 59 4 187 3 seqA Negative modulator of initiation of replication Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
F2EP55 4.05e-75 226 57 2 190 3 seqA Negative modulator of initiation of replication Pantoea ananatis (strain AJ13355)
B4ESN7 1.26e-73 222 57 3 189 3 seqA Negative modulator of initiation of replication Proteus mirabilis (strain HI4320)
Q32IN7 5.22e-73 220 58 4 187 3 seqA Negative modulator of initiation of replication Shigella dysenteriae serotype 1 (strain Sd197)
A4W853 6.71e-73 220 58 3 186 3 seqA Negative modulator of initiation of replication Enterobacter sp. (strain 638)
Q5E6N6 8.81e-64 197 55 2 182 3 seqA Negative modulator of initiation of replication Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9KQA4 2.74e-61 191 53 3 182 3 seqA Negative modulator of initiation of replication Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VI46 2.06e-59 186 51 3 184 3 seqA Negative modulator of initiation of replication Vibrio atlanticus (strain LGP32)
Q6LTC6 1.19e-55 176 50 2 182 3 seqA Negative modulator of initiation of replication Photobacterium profundum (strain SS9)
C4K392 1e-53 171 45 1 182 3 seqA Negative modulator of initiation of replication Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
A0KIH3 9.48e-48 156 46 4 182 3 seqA Negative modulator of initiation of replication Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
E1W6L8 2.24e-47 156 44 3 206 3 seqA Negative modulator of initiation of replication Haemophilus parainfluenzae (strain T3T1)
C4LC10 3.17e-47 155 46 3 180 3 seqA Negative modulator of initiation of replication Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
P44564 3.65e-46 153 44 2 190 3 seqA Negative modulator of initiation of replication Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A6VMY4 5.79e-45 150 41 5 205 3 seqA Negative modulator of initiation of replication Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q65U90 3.28e-44 148 40 3 208 3 seqA Negative modulator of initiation of replication Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B8F412 1.92e-42 143 42 2 182 3 seqA Negative modulator of initiation of replication Glaesserella parasuis serovar 5 (strain SH0165)
Q485E3 5.36e-40 137 38 2 201 3 seqA Negative modulator of initiation of replication Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Q5QXP4 2.46e-38 132 37 2 182 3 seqA Negative modulator of initiation of replication Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q7VLX4 1.88e-36 128 38 2 181 3 seqA Negative modulator of initiation of replication Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q3IGV1 1.49e-35 125 34 3 198 3 seqA Negative modulator of initiation of replication Pseudoalteromonas translucida (strain TAC 125)
A1STA5 2.72e-32 117 33 3 203 3 seqA Negative modulator of initiation of replication Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
B0TUS0 1.97e-31 115 36 3 175 3 seqA Negative modulator of initiation of replication Shewanella halifaxensis (strain HAW-EB4)
Q15TS1 4.33e-31 114 35 4 179 3 seqA Negative modulator of initiation of replication Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q082Q5 1.11e-30 114 36 6 200 3 seqA Negative modulator of initiation of replication Shewanella frigidimarina (strain NCIMB 400)
E1SM51 1.91e-29 109 35 5 175 3 seqA Negative modulator of initiation of replication Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)
A1S6A5 6.99e-29 108 36 5 182 3 seqA Negative modulator of initiation of replication Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
B1KEH7 2.99e-27 104 34 4 188 3 seqA Negative modulator of initiation of replication Shewanella woodyi (strain ATCC 51908 / MS32)
Q8EEP2 1.63e-26 102 35 5 181 3 seqA Negative modulator of initiation of replication Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q12MQ7 3.1e-12 66 33 3 116 3 seqA Negative modulator of initiation of replication Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Q12MQ7 8.14e-08 53 71 0 35 3 seqA Negative modulator of initiation of replication Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00470
Feature type CDS
Gene seqA
Product replication initiation negative regulator SeqA
Location 99310 - 99858 (strand: 1)
Length 549 (nucleotides) / 182 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1530
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03925 SeqA protein C-terminal domain
PF17206 SeqA protein N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3057 Replication, recombination and repair (L) L Negative regulator of replication initiation SeqA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03645 negative modulator of initiation of replication - -

Protein Sequence

MKTIDVDEELYRYIAGHTQHIGESASVILRRMLNLGPQAPDVSSAPVSGTDNKTPAAASRPVKTAPLDPVRAVRELLLSDSYAEKKKTIDRFMLVLSALYSIDPLSFQKSTDELHGRTRVYFAGDEHTLLASGKTSKPRHIPGTPFWVITNTNTQRKQSMIEQIMQGMGFPVNTVEKVCNTL

Flanking regions ( +/- flanking 50bp)

TATCTTATAATGAAGCGTTTCGCGTTAACGAATAAAAGAACCGGGTAGAAATGAAAACAATCGACGTAGATGAAGAGCTTTATCGTTATATTGCAGGCCATACACAGCACATTGGTGAAAGTGCATCGGTGATTTTACGCCGTATGCTGAATTTAGGGCCGCAGGCACCGGATGTCAGCAGCGCACCAGTCAGCGGCACAGACAATAAGACGCCGGCTGCCGCATCCCGTCCGGTGAAAACGGCCCCTTTGGACCCTGTCCGTGCGGTGCGTGAATTGCTGTTATCTGACAGCTACGCGGAAAAAAAGAAAACAATCGATCGCTTTATGCTGGTGCTCTCCGCGCTGTACAGTATTGATCCGCTGAGTTTTCAGAAAAGCACGGATGAACTGCATGGCCGCACCCGCGTTTACTTTGCCGGTGATGAACACACACTGCTGGCCAGTGGTAAAACCAGCAAACCCCGGCATATTCCGGGTACCCCTTTCTGGGTTATCACCAACACAAATACACAACGAAAACAGAGTATGATCGAGCAGATTATGCAGGGAATGGGTTTCCCGGTAAATACGGTAGAGAAAGTCTGCAATACCCTGTAAGGGGTATTTTGCCTGTCTGTTTTTGTAAAAAGCATGAGTACCGGCCGGTA