COG3057


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3057, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Negative regulator of replication initiation SeqA
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG3057 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1530 FBDBKF_09880 72758 73312 -1 seqA replication initiation negative regulator SeqA Morganella morganii S1
1 group_1530 EHELCC_04680 264723 265277 -1 seqA replication initiation negative regulator SeqA Morganella morganii S2
2 group_1530 NLDBIP_04680 264519 265073 -1 seqA replication initiation negative regulator SeqA Morganella morganii S4
3 group_1530 LHKJJB_13950 70305 70859 1 seqA replication initiation negative regulator SeqA Morganella morganii S3
4 group_1530 HKOGLL_12585 73539 74093 -1 seqA replication initiation negative regulator SeqA Morganella morganii S5
5 group_1530 F4V73_RS00470 99310 99858 1 seqA replication initiation negative regulator SeqA Morganella psychrotolerans
6 group_1530 PMI_RS02695 588863 589414 1 seqA replication initiation negative regulator SeqA Proteus mirabilis HI4320