Orthogroup:group_1537


Homologs in group_1537

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09970 FBDBKF_09970 Morganella morganii S1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
EHELCC_04770 EHELCC_04770 Morganella morganii S2 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
NLDBIP_04770 NLDBIP_04770 Morganella morganii S4 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
LHKJJB_13860 LHKJJB_13860 Morganella morganii S3 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
HKOGLL_12675 HKOGLL_12675 Morganella morganii S5 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
F4V73_RS00375 F4V73_RS00375 Morganella psychrotolerans miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
PMI_RS02205 PMI_RS02205 Proteus mirabilis HI4320 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB

Distribution of group_1537 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1537 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1537

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1537.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 miaB 7

Product

# Product Occurence
1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0621 7 J Translation, ribosomal structure and biogenesis (J) tRNA A37 methylthiotransferase MiaB

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06168 7 tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00919 7 Uncharacterized protein family UPF0004
PF01938 7 TRAM domain
PF04055 7 Radical SAM superfamily

Annotations of the 511 SwissProt hits

Annotation Number of occurrences
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 509
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 1 1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2 1

Protein length

Min length 476
Max length 479
Mean length (sd) 478.6 (1.1)
Median length 479.0

Protein length distribution