Orthogroup:group_1416


Homologs in group_1416

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08750 FBDBKF_08750 Morganella morganii S1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
EHELCC_12775 EHELCC_12775 Morganella morganii S2 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
NLDBIP_13115 NLDBIP_13115 Morganella morganii S4 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
LHKJJB_13440 LHKJJB_13440 Morganella morganii S3 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
HKOGLL_11590 HKOGLL_11590 Morganella morganii S5 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
F4V73_RS09965 F4V73_RS09965 Morganella psychrotolerans - peptidase U32 family protein
PMI_RS17155 PMI_RS17155 Proteus mirabilis HI4320 - peptidase U32 family protein

Distribution of group_1416 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1416 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1416

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1416.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlhA 5
2 - 2

Product

# Product Occurence
1 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family 5
2 peptidase U32 family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0826 7 J Translation, ribosomal structure and biogenesis (J) 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K24844 7 O2-independent ubiquinone biosynthesis protein UbiU - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01136 7 Peptidase family U32

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
23S rRNA 5-hydroxycytidine C2501 synthase 1
Collagenase 1
Collagenase (Fragment) 1
Ubiquinone biosynthesis protein UbiU 1
Uncharacterized protease MJ0090 1
tRNA hydroxylation protein P 4
tRNA hydroxylation protein P1 1
tRNA hydroxylation protein P2 1

Protein length

Unique protein length 331

Protein length distribution