Orthogroup:group_1402


Homologs in group_1402

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08660 FBDBKF_08660 Morganella morganii S1 rimP ribosome maturation factor RimP
EHELCC_12865 EHELCC_12865 Morganella morganii S2 rimP ribosome maturation factor RimP
NLDBIP_13205 NLDBIP_13205 Morganella morganii S4 rimP ribosome maturation factor RimP
LHKJJB_13350 LHKJJB_13350 Morganella morganii S3 rimP ribosome maturation factor RimP
HKOGLL_11680 HKOGLL_11680 Morganella morganii S5 rimP ribosome maturation factor RimP
F4V73_RS09885 F4V73_RS09885 Morganella psychrotolerans rimP ribosome maturation factor RimP
PMI_RS17015 PMI_RS17015 Proteus mirabilis HI4320 rimP ribosome maturation factor RimP

Distribution of group_1402 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1402 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1402

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1402.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rimP 7

Product

# Product Occurence
1 ribosome maturation factor RimP 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0779 7 J Translation, ribosomal structure and biogenesis (J) Ribosome maturation factor RimP

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09748 7 ribosome maturation factor RimP - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02576 7 RimP N-terminal domain
PF17384 7 RimP C-terminal SH3 domain

Annotations of the 515 SwissProt hits

Annotation Number of occurrences
Ribosome maturation factor RimP 515

Protein length

Min length 150
Max length 160
Mean length (sd) 157.1 (4.9)
Median length 160.0

Protein length distribution