Orthogroup:group_1297



Homologs in group_1297

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07940 FBDBKF_07940 Morganella morganii S1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
EHELCC_13770 EHELCC_13770 Morganella morganii S2 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
NLDBIP_14215 NLDBIP_14215 Morganella morganii S4 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
LHKJJB_08635 LHKJJB_08635 Morganella morganii S3 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
HKOGLL_08185 HKOGLL_08185 Morganella morganii S5 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
F4V73_RS13045 F4V73_RS13045 Morganella psychrotolerans - response regulator transcription factor
PMI_RS00930 PMI_RS00930 Proteus mirabilis HI4320 - response regulator transcription factor

Distribution of group_1297 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1297 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1297

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1297.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 citB 5
2 - 2

Product

# Product Occurence
1 DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains 5
2 response regulator transcription factor 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4566 7 TK Signal transduction mechanisms (T)
Transcription (K)
DNA-binding response regulator, FixJ family, consists of REC and HTH domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K20264 7 two-component system, NarL family, response regulator FusR Two-component system
Quorum sensing
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00072 7 Response regulator receiver domain
PF00196 7 Bacterial regulatory proteins, luxR family

Annotations of the 428 SwissProt hits

Annotation Number of occurrences
Aerobic respiration control protein ArcA 4
Aerobic respiration control protein ArcA homolog 1
Alginate biosynthesis transcriptional regulatory protein AlgB 3
Alkaline phosphatase synthesis transcriptional regulatory protein SphR 1
C4-dicarboxylate transport transcriptional regulatory protein DctD 2
C4-dicarboxylate transport transcriptional regulatory protein DctR 1
Chemotaxis protein CheY 6
Chemotaxis protein CheY homolog 3
Chemotaxis protein CheY1 2
Cyclic di-GMP phosphodiesterase TM_0186 1
Cyclic di-GMP phosphodiesterase response regulator RpfG 1
DNA-binding dual transcriptional regulator OmpR 8
DNA-binding transcriptional activator DevR/DosR 2
DNA-binding transcriptional activator EvgA 4
DNA-binding transcriptional regulator NtrC 7
Fimbriae Z protein 3
Gliding motility regulatory protein 1
Glycerol metabolism activator 2
Heme response regulator HssR 17
Hydrogenase transcriptional regulatory protein HoxA 2
Hydrogenase transcriptional regulatory protein HupR1 1
Light-activated DNA-binding protein EL222 1
Methanol utilization control regulatory protein MoxX 1
Nitrate/nitrite response regulator protein NarL 4
Nitrate/nitrite response regulator protein NarP 1
Nitrate/nitrite response regulator protein homolog 1
Nodulation protein W 1
Oxygen regulatory protein NreC 18
Phosphate regulon transcriptional regulatory protein PhoB 6
Photosynthetic apparatus regulatory protein RegA 1
Positive alginate biosynthesis regulatory protein 1
Probable C4-dicarboxylate response regulator DctR 2
Probable transcriptional regulator ycf29 3
Probable transcriptional regulatory protein NarL 2
Probable transcriptional regulatory protein SYNPCC7002_A0851 1
Probable transcriptional regulatory protein SgaR 1
Probable transcriptional regulatory protein TcrX 1
Protein CcdB 1
Protein RcaC 1
Protein-glutamate methylesterase/protein-glutamine glutaminase 36
Protein-glutamate methylesterase/protein-glutamine glutaminase 1 38
Protein-glutamate methylesterase/protein-glutamine glutaminase 2 22
Protein-glutamate methylesterase/protein-glutamine glutaminase 3 7
Protein-glutamate methylesterase/protein-glutamine glutaminase 4 1
Protein-glutamate methylesterase/protein-glutamine glutaminase 5 1
Protein-glutamate methylesterase/protein-glutamine glutaminase 6 1
Protein-glutamate methylesterase/protein-glutamine glutaminase of group 1 operon 2
Protein-glutamate methylesterase/protein-glutamine glutaminase of group 2 operon 3
Putative HTH-type transcriptional regulator MT0914 1
Putative HTH-type transcriptional regulator Mb0914c 1
Putative HTH-type transcriptional regulator Rv0890c 1
Putative HTH-type transcriptional regulator YhjB 1
Putative HTH-type transcriptional regulator in exeN 3'region (Fragment) 1
Putative transcriptional regulator 1
Putative two-component response regulator ARR13 1
Regulatory protein VanR 1
Response regulator ArlR 10
Response regulator GacA 4
Response regulator GtcR 1
Response regulator MprA 14
Response regulator RppA 1
Response regulator Rre1 1
Response regulator SaeR 10
Response regulator SsrB 1
Response regulator UvrY 4
Response regulator protein FleR 1
Response regulator protein PmrA 1
Response regulator protein TmoT 1
Response regulator protein TodT 3
Response regulator protein VraR 12
Sensor kinase CckA 1
Sensory transduction protein LytR 2
Sensory transduction protein LytT 4
Spore germination protein GerE 1
Sporulation initiation phosphotransferase F 2
Stage 0 sporulation protein A 6
Stage 0 sporulation protein A (Fragment) 3
Stage 0 sporulation protein A homolog 2
Swarming motility regulation protein RssB 1
Tetrathionate response regulatory protein TtrR 1
TorCAD operon transcriptional regulatory protein TorR 2
Transcriptional activator protein ExaE 1
Transcriptional regulatory protein BasR 2
Transcriptional regulatory protein BtsR 6
Transcriptional regulatory protein ChvI 3
Transcriptional regulatory protein CiaR 2
Transcriptional regulatory protein CitT 1
Transcriptional regulatory protein ComA 1
Transcriptional regulatory protein DegU 2
Transcriptional regulatory protein DesR 1
Transcriptional regulatory protein FixJ 3
Transcriptional regulatory protein FlgR 1
Transcriptional regulatory protein GlrR 1
Transcriptional regulatory protein KdpE 3
Transcriptional regulatory protein LiaR 1
Transcriptional regulatory protein LnrK 1
Transcriptional regulatory protein LytR 9
Transcriptional regulatory protein MalR 1
Transcriptional regulatory protein MctR 1
Transcriptional regulatory protein NatR 1
Transcriptional regulatory protein PdtaR 2
Transcriptional regulatory protein PhoP 3
Transcriptional regulatory protein PmrA 1
Transcriptional regulatory protein QseB 1
Transcriptional regulatory protein QseF 1
Transcriptional regulatory protein RcsB 7
Transcriptional regulatory protein ResD 1
Transcriptional regulatory protein SrrA 8
Transcriptional regulatory protein TcrA 2
Transcriptional regulatory protein TdiR 1
Transcriptional regulatory protein TrcR 1
Transcriptional regulatory protein UhpA 5
Transcriptional regulatory protein YdfI 1
Transcriptional regulatory protein-like BtsR 1
Two-component response regulator PprB 1
Uncharacterized 14.6 kDa protein in sodA1 3'region 1
Uncharacterized response regulatory protein SO_2823 1
Uncharacterized response regulatory protein VC_0693 1
Uncharacterized response regulatory protein VP0538 1
Uncharacterized response regulatory protein VV1_0503 1
Uncharacterized response regulatory protein YPO3287/y0902/YP_0397 1
Uncharacterized response regulatory protein YgeK 2
Uncharacterized transcriptional regulatory protein YclJ 1
Uncharacterized transcriptional regulatory protein YesN 1
Uncharacterized transcriptional regulatory protein YhcZ 1
Uncharacterized transcriptional regulatory protein YkoG 1
Uncharacterized transcriptional regulatory protein YvfU 1
Uncharacterized transcriptional regulatory protein YxjL 1
Virulence factors putative positive transcription regulator BvgA 3
Virulence transcriptional regulatory protein PhoP 7

Protein length

Min length 209
Max length 210
Mean length (sd) 209.1 (0.4)
Median length 209.0

Protein length distribution