Orthogroup:group_1057


Homologs in group_1057

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05985 FBDBKF_05985 Morganella morganii S1 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
EHELCC_09030 EHELCC_09030 Morganella morganii S2 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
NLDBIP_09410 NLDBIP_09410 Morganella morganii S4 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
LHKJJB_08345 LHKJJB_08345 Morganella morganii S3 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
HKOGLL_07895 HKOGLL_07895 Morganella morganii S5 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase
F4V73_RS15910 F4V73_RS15910 Morganella psychrotolerans uppS polyprenyl diphosphate synthase
PMI_RS11260 PMI_RS11260 Proteus mirabilis HI4320 ispU (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase

Distribution of group_1057 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1057 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1057

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1057.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispU 6
2 uppS 1

Product

# Product Occurence
1 (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase 6
2 polyprenyl diphosphate synthase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0020 7 I Lipid transport and metabolism (I) Undecaprenyl pyrophosphate synthase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00806 7 undecaprenyl diphosphate synthase [EC:2.5.1.31] Peptidoglycan biosynthesis
Terpenoid backbone biosynthesis
Biosynthesis of secondary metabolites		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01255 7 Putative undecaprenyl diphosphate synthase

Annotations of the 222 SwissProt hits

Annotation Number of occurrences
(2Z,6E)-farnesyl diphosphate synthase 4
(2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic 1
(2Z,6Z)-farnesyl diphosphate synthase, chloroplastic 1
Bifunctional protein CrtB/UppS 1
Cis-prenyltransferase 4, chloroplastic 1
Cis-prenyltransferase 7, chloroplastic 1
Decaprenyl diphosphate synthase 5
Dehydrodolichyl diphosphate synthase 1
Dehydrodolichyl diphosphate synthase 1 1
Dehydrodolichyl diphosphate synthase 2 1
Dehydrodolichyl diphosphate synthase 3 1
Dehydrodolichyl diphosphate synthase 4 1
Dehydrodolichyl diphosphate synthase 5 1
Dehydrodolichyl diphosphate synthase 6 1
Dehydrodolichyl diphosphate synthase 7 1
Dehydrodolichyl diphosphate synthase 8 1
Dehydrodolichyl diphosphate synthase CPT3 1
Dehydrodolichyl diphosphate synthase CPT5, chloroplastic 1
Dehydrodolichyl diphosphate synthase complex subunit DHDDS 1
Dehydrodolichyl diphosphate synthase complex subunit Dhdds 1
Dehydrodolichyl diphosphate synthase complex subunit RER2 1
Dehydrodolichyl diphosphate synthase complex subunit SPAC4D7.04c 1
Dehydrodolichyl diphosphate synthase complex subunit SRT1 1
Di-trans,poly-cis-undecaprenyl-diphosphate synthase 1
Dimethylallylcistransferase CPT1, chloroplastic 1
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) 42
Isoprenyl transferase 105
Isoprenyl transferase 1 9
Isoprenyl transferase 2 9
Nerylneryl diphosphate synthase CPT2, chloroplastic 1
Rubber cis-polyprenyltransferase HRT2 1
Short-chain Z-isoprenyl diphosphate synthase 2
Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl diphosphate specific) 1
Tritrans,polycis-undecaprenyl-diphosphate synthase (GGDP specific) 1
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) 19

Protein length

Min length 252
Max length 257
Mean length (sd) 256.3 (1.9)
Median length 257.0

Protein length distribution