Homologs in group_704

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03045 FBDBKF_03045 82.2 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_07490 EHELCC_07490 82.2 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_07815 NLDBIP_07815 82.2 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_07350 LHKJJB_07350 82.2 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_03580 HKOGLL_03580 82.2 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS11875 F4V73_RS11875 83.9 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_704

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_704

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67660 9.63e-177 493 80 0 295 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 9.63e-177 493 80 0 295 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P76369 9.68e-57 188 37 3 287 3 yeeY Uncharacterized HTH-type transcriptional regulator YeeY Escherichia coli (strain K12)
P0ACR2 1.75e-33 127 28 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli (strain K12)
P0ACR3 1.75e-33 127 28 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli O157:H7
P77700 3e-27 111 26 6 302 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
P0ACR0 3.95e-23 99 27 5 279 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 3.95e-23 99 27 5 279 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
Q8FK66 4.84e-23 99 27 4 280 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 4.84e-23 99 27 4 280 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RF30 8.46e-23 99 27 4 280 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 8.46e-23 99 27 4 280 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
Q765S2 3.69e-22 96 26 1 251 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
Q9S4Y7 3.55e-19 89 25 3 289 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 3.55e-19 89 25 3 289 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z8R3 1.07e-18 87 25 3 289 3 allS HTH-type transcriptional activator AllS Salmonella typhi
Q57S50 1.15e-18 87 25 3 289 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P48271 7.25e-15 77 25 6 263 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
Q8KA72 3.32e-14 75 28 6 201 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q3MCB5 3.78e-14 75 27 7 266 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
Q8YQ82 3.29e-13 72 26 7 266 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P0A2Q4 5.23e-13 71 28 4 196 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 5.23e-13 71 28 4 196 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
O78432 1.36e-12 70 26 9 275 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
P0A9G1 1.61e-12 70 30 6 200 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 1.61e-12 70 30 6 200 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 1.61e-12 70 30 6 200 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
O19892 1.8e-12 70 26 7 262 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
P73123 2.2e-12 70 25 7 268 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52696 2.69e-12 69 26 8 246 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
Q6B936 2.84e-12 69 27 11 279 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P0DUU5 3.43e-12 68 26 8 293 1 aceR HTH-type transcriptional regulator AceR Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
A2CI69 1.49e-11 67 25 7 268 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
P51205 2.49e-10 63 25 9 267 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
Q1XDT2 3.87e-10 63 25 9 267 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
Q85G62 5.73e-10 62 25 9 275 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
P55576 7.79e-09 59 35 1 93 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9JPU9 3.21e-08 57 27 9 261 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
P25544 4.07e-08 57 24 7 262 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
P55181 7.13e-08 56 24 10 291 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
Q9JXW7 8.01e-08 56 27 9 261 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
O35038 1.12e-07 55 26 7 209 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P30864 1.31e-07 55 24 8 258 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q5N5I5 1.46e-07 55 24 9 252 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 1.46e-07 55 24 9 252 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q57083 1.87e-07 55 48 0 64 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
P74422 2.29e-07 55 25 4 177 3 ntcB Probable nitrogen assimilation transcriptional activator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P42722 2.43e-07 54 26 7 261 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q06610 4.47e-07 53 25 9 269 3 rbcR RuBisCO operon transcriptional regulator Acidithiobacillus ferrooxidans
P52686 4.84e-07 53 26 3 178 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
P94678 6.56e-07 53 22 1 179 1 tsaR HTH-type transcriptional regulator TsaR Comamonas testosteroni
P67662 1.17e-06 52 24 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 1.17e-06 52 24 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 1.17e-06 52 24 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
O32186 1.41e-06 52 26 11 284 3 yusT Uncharacterized HTH-type transcriptional regulator YusT Bacillus subtilis (strain 168)
P0ACR4 1.63e-06 52 28 8 264 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 1.63e-06 52 28 8 264 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 1.63e-06 52 28 8 264 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P56885 4.79e-06 50 24 6 266 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
P96725 4.85e-06 50 23 8 268 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
P58332 5.44e-06 50 24 6 266 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P52662 8.06e-06 50 24 9 269 3 pecT HTH-type transcriptional regulator PecT Dickeya dadantii (strain 3937)
P0A4T7 1.28e-05 49 25 6 216 3 pcaQ HTH-type transcriptional regulator PcaQ Rhizobium radiobacter
P0A4T6 1.28e-05 49 25 6 216 3 pcaQ HTH-type transcriptional regulator PcaQ Agrobacterium fabrum (strain C58 / ATCC 33970)
Q55459 1.97e-05 48 22 7 264 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52595 2.56e-05 48 25 8 269 3 cbbR HTH-type transcriptional regulator CbbR Rhodospirillum rubrum
P96194 3.69e-05 46 41 1 70 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
P45349 3.82e-05 48 24 10 257 3 metR HTH-type transcriptional regulator MetR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4G384 3.85e-05 48 22 9 271 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
O34685 5.72e-05 47 36 0 72 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P42427 6.29e-05 47 26 2 142 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P39127 6.65e-05 47 22 6 243 3 citR HTH-type transcriptional regulator CitR Bacillus subtilis (strain 168)
P33634 6.89e-05 47 24 10 283 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
P25545 7.86e-05 47 24 6 263 3 cbbR HTH-type transcriptional regulator CbbR Xanthobacter flavus
P20668 0.000115 46 31 2 110 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P0ACQ4 0.000116 46 23 8 253 1 oxyR DNA-binding transcriptional dual regulator OxyR Escherichia coli (strain K12)
P0ACQ5 0.000116 46 23 8 253 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ6 0.000116 46 23 8 253 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O157:H7
P46068 0.000132 46 38 0 60 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
A5F9F9 0.000141 46 23 4 242 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P76250 0.000144 46 32 1 89 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
P27111 0.000145 46 38 1 81 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P0C6D1 0.000148 46 23 4 242 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P52691 0.000151 46 25 2 148 3 lrrA Probable HTH-type transcriptional regulator LrrA Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52678 0.000239 45 38 0 72 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium leprae (strain TN)
Q8X4M5 0.000284 45 38 1 81 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q8XBK9 0.000333 45 27 1 131 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
Q05840 0.00044 44 32 0 86 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida
A0T0G2 0.000458 44 26 1 126 3 rbcR Probable RuBisCO transcriptional regulator Phaeodactylum tricornutum (strain CCAP 1055/1)
P94501 0.000467 44 21 6 278 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
P05827 0.000508 44 29 3 131 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
P77744 0.000512 44 21 1 176 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P49518 0.000532 44 28 2 129 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
P0A2Q2 0.000558 44 29 3 131 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 0.000558 44 29 3 131 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
O87883 0.000572 43 38 0 78 3 oxyR Probable hydrogen peroxide-inducible genes activator (Fragment) Mycobacterium xenopi
Q9X725 0.000581 44 25 6 188 3 oxyR Hydrogen peroxide-inducible genes activator Dickeya chrysanthemi
Q0TD46 0.000616 44 27 1 131 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P45463 0.000639 44 27 1 131 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q1R6S1 0.00065 44 27 1 131 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
Q8FDH0 0.00065 44 27 1 131 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P75836 0.000653 44 40 0 59 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
P71318 0.000775 44 22 8 268 3 oxyR Hydrogen peroxide-inducible genes activator Pectobacterium carotovorum subsp. carotovorum
Q9HWH8 0.001 43 37 0 75 3 nmoR HTH-type transcriptional regulator NmoR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18385
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 4034757 - 4035659 (strand: 1)
Length 903 (nucleotides) / 300 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_704
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MSKDKAITLESLRVMDAIDRRGSFAAAADELNRVPSALSYTMQKLEEDLDVVLFDRSGHRTKFTNVGRMLLERGRILLEAADKLTSDAEALARGWEPHITIVCEALTPASRLFPLVEKLAEKSNTQLSLVTEVLAGAWESLESGKCDIVISPDMHFRSSSEINFRPLYNTTSVYVASPDHPIHNEPEPLAEETRLKYRGIAIADTARERPVLTVLLLDKQRRLTVSSIEDKRRALIAGLGVATMPIDLIEDDLKEGRLRVVGPEYHHENNIIMAWRRDSMGEAKSWCLREIPKLFAADKK

Flanking regions ( +/- flanking 50bp)

GCAAGTTAATCTGGTGCCAATAATCAAATTATTTGATAGAGATAAGTATAATGAGTAAAGATAAAGCCATTACATTGGAATCTCTACGAGTGATGGATGCCATTGATCGTAGAGGAAGTTTTGCTGCCGCCGCTGATGAGCTAAATCGCGTCCCATCAGCACTCAGTTATACCATGCAGAAATTAGAAGAAGATTTGGATGTTGTGCTATTTGACCGTTCAGGACATCGAACTAAATTTACTAATGTGGGAAGAATGTTACTTGAAAGAGGGCGTATTCTTCTTGAAGCTGCAGATAAATTAACTTCTGATGCTGAAGCGCTAGCTCGCGGTTGGGAGCCACATATTACGATTGTGTGTGAAGCATTAACACCCGCATCTCGCTTATTCCCGTTAGTTGAAAAATTAGCTGAAAAATCAAATACACAACTCTCTTTAGTCACCGAAGTACTTGCTGGGGCATGGGAAAGCTTAGAAAGTGGTAAATGTGATATTGTTATTTCACCGGATATGCATTTTCGTTCTTCATCAGAAATCAATTTCCGCCCTTTATATAATACCACCAGTGTCTATGTTGCCAGCCCTGATCACCCTATCCATAATGAACCTGAACCACTTGCAGAAGAAACTCGCTTAAAATATCGCGGTATTGCTATCGCCGATACCGCAAGAGAACGACCTGTTTTAACTGTACTGTTATTAGATAAACAGCGTCGTTTAACGGTGAGTTCGATTGAAGATAAACGTCGAGCATTAATTGCCGGTTTAGGGGTTGCTACTATGCCTATTGATTTAATTGAAGATGATTTAAAAGAGGGGCGTTTACGTGTGGTTGGCCCTGAATATCATCATGAAAATAATATTATTATGGCGTGGCGCAGAGACAGTATGGGAGAAGCTAAATCCTGGTGTTTACGTGAAATTCCTAAACTCTTTGCCGCGGATAAAAAATAGTTTGTTCGCTAGAGTTTGATAATGCAATTAAAAAAGATCCCCCTAGAGGA