Homologs in group_704

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03045 FBDBKF_03045 100.0 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_07815 NLDBIP_07815 100.0 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_07350 LHKJJB_07350 100.0 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_03580 HKOGLL_03580 100.0 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS11875 F4V73_RS11875 94.0 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS18385 PMI_RS18385 82.2 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_704

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_704

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67660 0.0 521 83 0 298 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 0.0 521 83 0 298 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P76369 5.65e-56 186 37 3 287 3 yeeY Uncharacterized HTH-type transcriptional regulator YeeY Escherichia coli (strain K12)
P0ACR2 3.6e-34 129 29 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli (strain K12)
P0ACR3 3.6e-34 129 29 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli O157:H7
P77700 3.11e-28 113 28 6 295 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
Q765S2 4.77e-23 99 28 3 252 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
P0ACR0 6.28e-21 94 26 4 293 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 6.28e-21 94 26 4 293 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
Q8FK66 3.17e-20 92 26 4 293 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 3.17e-20 92 26 4 293 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RF30 5.33e-20 91 26 4 293 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 5.33e-20 91 26 4 293 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
Q9S4Y7 2.14e-19 89 25 4 294 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 2.14e-19 89 25 4 294 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z8R3 6.55e-19 88 25 4 294 3 allS HTH-type transcriptional activator AllS Salmonella typhi
Q57S50 8.01e-19 88 25 4 294 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P48271 1.78e-13 73 26 7 264 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
P0DUU5 2.59e-12 69 41 0 94 1 aceR HTH-type transcriptional regulator AceR Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
P52696 2.86e-10 63 26 6 248 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
Q3MCB5 5.44e-10 62 25 7 266 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
Q8YQ82 1.97e-09 61 44 0 75 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P55181 3.64e-09 60 24 10 291 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
P30864 3.8e-09 60 24 7 258 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
A2CI69 5.31e-09 59 29 3 151 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
O19892 5.47e-09 59 22 9 304 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
Q8KA72 1.13e-08 58 26 5 180 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P73123 1.15e-08 58 24 11 308 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O78432 1.45e-08 58 25 9 269 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
Q6B936 1.61e-08 58 24 9 275 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P0A9G1 4.58e-08 57 26 9 264 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 4.58e-08 57 26 9 264 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 4.58e-08 57 26 9 264 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
P0A2Q4 5.98e-08 56 27 6 201 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 5.98e-08 56 27 6 201 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P51205 9.91e-08 55 25 11 275 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
P55576 1.43e-07 55 35 1 90 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q85G62 1.79e-07 55 24 8 268 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
Q1XDT2 1.8e-07 55 25 11 275 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
Q06610 1.82e-07 55 26 9 265 3 rbcR RuBisCO operon transcriptional regulator Acidithiobacillus ferrooxidans
P74422 2.83e-07 54 26 4 179 3 ntcB Probable nitrogen assimilation transcriptional activator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q57083 3.31e-07 54 47 0 65 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
Q5N5I5 6.33e-07 53 24 8 265 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 6.33e-07 53 24 8 265 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52686 1.14e-06 52 28 2 184 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
Q9JPU9 1.44e-06 52 25 9 260 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
P25544 2.14e-06 52 27 6 185 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
P52693 3e-06 51 26 7 247 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P96725 3.7e-06 51 23 6 262 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
Q9JXW7 4.44e-06 50 25 9 260 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P45349 6.4e-06 50 25 10 266 3 metR HTH-type transcriptional regulator MetR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0ACR4 8.83e-06 50 25 6 266 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 8.83e-06 50 25 6 266 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 8.83e-06 50 25 6 266 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P76250 1.03e-05 49 34 1 89 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
O35038 1.42e-05 49 26 10 214 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P67662 1.52e-05 49 25 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 1.52e-05 49 25 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 1.52e-05 49 25 4 271 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
P46068 1.99e-05 48 41 0 60 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
P94678 2.69e-05 48 23 1 177 1 tsaR HTH-type transcriptional regulator TsaR Comamonas testosteroni
O32186 2.88e-05 48 27 11 265 3 yusT Uncharacterized HTH-type transcriptional regulator YusT Bacillus subtilis (strain 168)
P58332 3.24e-05 48 23 7 267 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P42722 3.37e-05 48 24 8 265 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P96194 3.42e-05 46 38 0 72 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
P56885 3.71e-05 48 23 7 267 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
P25545 4.5e-05 48 24 7 276 3 cbbR HTH-type transcriptional regulator CbbR Xanthobacter flavus
Q55459 6.28e-05 47 31 1 93 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8XBK9 6.51e-05 47 22 10 311 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
P45463 6.82e-05 47 22 10 311 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q0TD46 7.53e-05 47 24 6 188 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q4G384 8.35e-05 47 30 0 80 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
P94387 9.74e-05 47 33 2 106 3 ycgK Uncharacterized HTH-type transcriptional regulator YcgK Bacillus subtilis (strain 168)
Q9I4X0 0.000107 47 24 6 249 1 mvfR Multiple virulence factor regulator MvfR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O87883 0.000107 45 30 3 181 3 oxyR Probable hydrogen peroxide-inducible genes activator (Fragment) Mycobacterium xenopi
A0T0G2 0.00011 46 27 1 127 3 rbcR Probable RuBisCO transcriptional regulator Phaeodactylum tricornutum (strain CCAP 1055/1)
P52678 0.000142 46 40 0 72 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium leprae (strain TN)
P0ACQ4 0.000174 46 22 7 250 1 oxyR DNA-binding transcriptional dual regulator OxyR Escherichia coli (strain K12)
P0ACQ5 0.000174 46 22 7 250 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACQ6 0.000174 46 22 7 250 3 oxyR Hydrogen peroxide-inducible genes activator Escherichia coli O157:H7
P75836 0.000188 45 34 0 69 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
A0T0V5 0.000202 45 28 1 127 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
P77746 0.000203 45 27 5 182 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
A5F9F9 0.000229 45 23 4 242 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P0C6D1 0.000251 45 23 4 242 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P33634 0.000263 45 23 9 275 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
P05827 0.000331 45 30 3 131 3 ilvY HTH-type transcriptional regulator IlvY Escherichia coli (strain K12)
P0A2Q2 0.000341 45 30 3 131 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q3 0.000341 45 30 3 131 3 ilvY HTH-type transcriptional activator IlvY Salmonella typhi
P20668 0.000393 45 34 0 76 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P44418 0.000452 44 27 3 148 3 oxyR Hydrogen peroxide-inducible genes activator Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1R6S1 0.000464 44 23 6 188 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
Q8FDH0 0.000464 44 23 6 188 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P27111 0.000563 44 38 1 81 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P49518 0.000688 44 31 1 91 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
P52689 0.00072 44 31 0 73 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
P52690 0.000722 44 24 9 269 3 cbbR HTH-type transcriptional regulator CbbR Cereibacter sphaeroides
O34685 0.000773 43 33 0 72 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
P37499 0.000777 43 24 6 178 3 yybE Uncharacterized HTH-type transcriptional regulator YybE Bacillus subtilis (strain 168)
P52691 0.000803 43 30 0 81 3 lrrA Probable HTH-type transcriptional regulator LrrA Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P77171 0.00082 43 27 4 190 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P52665 0.001 42 31 0 95 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_07490
Feature type CDS
Gene lysR
Product DNA-binding transcriptional regulator, LysR family
Location 237203 - 238099 (strand: 1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession ZDB_216
Length 269970 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_704
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MSKDKALTLESLRVMDAIDRRGSFAAAAEELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRLLLEAADKLTSDAEALARGWEPHLTIVCEALIPTASLFPLVDKLAQKSTTQLTLATEVLAGAWERLETGRADIVIAPDMHFRTSSEINSRPLYSVVNVYVAAPDHPIHKEPEPLSDTTRVKYRGIAVADTARERPVLTVLLLDKQQRLTVSSIDDKRRALLAGLGVASMPYPLVEKDIQEGRLKVIGSEYSHETNVIMAWRRDSMGEAKAWCLREIPKLFSGK

Flanking regions ( +/- flanking 50bp)

TTAGCCAGTTAATCTGGTGGCGACATTCAAAATTTCTGACTGAGATAATGATGAGTAAAGACAAAGCGTTAACGCTGGAATCATTGCGCGTGATGGATGCCATCGACCGCCGGGGAAGTTTTGCGGCGGCGGCGGAAGAACTGGGGCGTGTACCGTCCGCCCTGAGCTATACCATGCAGAAACTGGAAGAAGAGCTGGATGTTGTTCTGTTTGACCGCTCGGGTCACCGGACAAAATTCACTAATGTCGGGCGGATGCTGCTGGAGCGCGGTCGCCTGCTGCTGGAAGCGGCGGATAAACTGACCAGTGATGCGGAAGCACTGGCAAGAGGCTGGGAGCCGCATCTGACCATCGTCTGTGAGGCGCTGATCCCGACGGCCTCGCTGTTCCCGCTGGTGGACAAACTGGCACAGAAATCCACCACTCAGCTGACTCTGGCCACCGAAGTGCTTGCCGGTGCCTGGGAGCGGCTGGAAACCGGGCGCGCCGATATTGTGATTGCGCCGGATATGCATTTCCGCACCTCTTCTGAAATCAATTCCCGTCCGCTCTATTCTGTGGTGAATGTGTATGTGGCGGCACCGGATCACCCTATCCACAAAGAGCCGGAGCCGTTATCCGATACCACACGGGTGAAATATCGCGGGATTGCCGTGGCGGATACCGCCCGCGAACGTCCGGTGCTGACGGTGTTACTGCTGGATAAACAACAGCGCCTGACGGTCAGCTCTATTGATGATAAACGTCGTGCCCTGCTTGCCGGACTGGGTGTGGCGAGCATGCCGTACCCGCTGGTGGAAAAAGATATTCAGGAAGGTCGCCTGAAAGTGATCGGCTCCGAATACAGCCATGAAACCAATGTGATTATGGCGTGGCGCCGCGACAGCATGGGTGAGGCCAAAGCCTGGTGTCTGCGGGAAATTCCGAAATTGTTCAGCGGAAAATAAACCGGCACTATCACCGGTCATTATCAGATACCTGCCCGGCTATCCGCGGC