Homologs in group_704

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03045 FBDBKF_03045 94.0 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_07490 EHELCC_07490 94.0 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_07815 NLDBIP_07815 94.0 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_07350 LHKJJB_07350 94.0 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_03580 HKOGLL_03580 94.0 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
PMI_RS18385 PMI_RS18385 83.9 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_704

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_704

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67660 0.0 514 83 0 298 1 yhaJ Probable HTH-type transcriptional regulator YhaJ Escherichia coli (strain K12)
P67661 0.0 514 83 0 298 1 yhaJ HTH-type transcriptional regulator YhaJ Escherichia coli O157:H7
P76369 1.71e-56 187 39 3 287 3 yeeY Uncharacterized HTH-type transcriptional regulator YeeY Escherichia coli (strain K12)
P0ACR2 2.47e-32 124 29 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli (strain K12)
P0ACR3 2.47e-32 124 29 2 280 3 ydhB Uncharacterized HTH-type transcriptional regulator YdhB Escherichia coli O157:H7
P77700 1.54e-27 111 27 6 296 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
P0ACR0 4.69e-21 94 27 3 292 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 4.69e-21 94 27 3 292 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
Q765S2 5.56e-21 93 26 1 251 3 allS HTH-type transcriptional activator AllS Klebsiella pneumoniae
Q8FK66 1.9e-20 92 26 3 292 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 1.9e-20 92 26 3 292 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RF30 3.1e-20 92 26 3 292 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 3.1e-20 92 26 3 292 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
Q9S4Y7 1.92e-18 87 25 3 292 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 1.92e-18 87 25 3 292 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z8R3 5.38e-18 85 25 3 292 3 allS HTH-type transcriptional activator AllS Salmonella typhi
Q57S50 6.27e-18 85 25 3 292 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P0DUU5 3.01e-11 66 40 0 94 1 aceR HTH-type transcriptional regulator AceR Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
P48271 3.09e-11 66 25 6 263 3 rbcR Probable RuBisCO transcriptional regulator Cyanophora paradoxa
Q3MCB5 1.55e-10 64 38 1 108 3 rbcR Probable RuBisCO transcriptional regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
Q8YQ82 1.94e-10 64 38 1 108 3 rbcR Probable RuBisCO transcriptional regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
O19892 2.97e-10 63 24 10 314 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
P55181 5.69e-10 62 24 9 290 3 yxjO Uncharacterized HTH-type transcriptional regulator YxjO Bacillus subtilis (strain 168)
Q8KA72 1.45e-09 61 26 5 184 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q6B936 1.7e-09 61 23 10 311 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P73123 2.27e-09 61 37 1 108 3 rbcR Probable RuBisCO transcriptional regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0A2Q4 1.28e-08 58 27 4 196 3 metR HTH-type transcriptional regulator MetR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2Q5 1.28e-08 58 27 4 196 3 metR HTH-type transcriptional regulator MetR Salmonella typhi
P0A9G1 2.13e-08 58 26 10 271 3 metR HTH-type transcriptional regulator MetR Shigella flexneri
P0A9F9 2.13e-08 58 26 10 271 1 metR HTH-type transcriptional regulator MetR Escherichia coli (strain K12)
P0A9G0 2.13e-08 58 26 10 271 3 metR HTH-type transcriptional regulator MetR Escherichia coli O157:H7
A2CI69 4.18e-08 57 29 3 151 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
P52696 4.21e-08 57 26 8 250 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P51205 6.2e-08 56 37 0 80 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
Q1XDT2 8.79e-08 56 37 0 80 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
P74422 1.31e-07 55 26 4 179 3 ntcB Probable nitrogen assimilation transcriptional activator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P55576 1.34e-07 55 33 1 107 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P67662 2.29e-07 54 27 5 272 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 2.29e-07 54 27 5 272 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 2.29e-07 54 27 5 272 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
O78432 2.92e-07 54 33 1 108 3 rbcR Probable RuBisCO transcriptional regulator Guillardia theta
Q57083 3.22e-07 54 48 0 64 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
Q85G62 4.45e-07 53 24 7 262 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
P30864 4.68e-07 53 23 8 259 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q8XBK9 1.25e-06 52 23 11 311 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
P45463 1.43e-06 52 23 11 311 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q06610 1.5e-06 52 25 8 270 3 rbcR RuBisCO operon transcriptional regulator Acidithiobacillus ferrooxidans
Q0TD46 2.04e-06 52 23 11 311 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
O35038 3.53e-06 51 25 8 219 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P52686 5.42e-06 50 27 2 176 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
Q1R6S1 6.31e-06 50 23 10 308 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
Q8FDH0 6.31e-06 50 23 10 308 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O32186 6.7e-06 50 27 12 286 3 yusT Uncharacterized HTH-type transcriptional regulator YusT Bacillus subtilis (strain 168)
P0ACR4 8.36e-06 50 28 9 265 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 8.36e-06 50 28 9 265 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 8.36e-06 50 28 9 265 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
Q5N5I5 1.71e-05 49 32 1 93 3 cmpR HTH-type transcriptional activator CmpR Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Q9F1R2 1.71e-05 49 32 1 93 1 cmpR HTH-type transcriptional activator CmpR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q4G384 2.39e-05 48 29 1 108 3 rbcR Probable RuBisCO transcriptional regulator Emiliania huxleyi
Q9I4X0 2.81e-05 48 26 6 246 1 mvfR Multiple virulence factor regulator MvfR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P39127 3.26e-05 48 23 6 243 3 citR HTH-type transcriptional regulator CitR Bacillus subtilis (strain 168)
Q9JPU9 3.3e-05 48 24 5 257 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
P76250 3.42e-05 48 33 1 89 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
A0T0V5 3.99e-05 48 28 1 127 3 rbcR-A Probable RuBisCO transcriptional regulator Thalassiosira pseudonana
Q9JXW7 4.45e-05 47 24 5 257 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P94678 4.72e-05 47 29 0 95 1 tsaR HTH-type transcriptional regulator TsaR Comamonas testosteroni
P75836 4.75e-05 47 36 0 69 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
P45349 5.04e-05 47 25 10 266 3 metR HTH-type transcriptional regulator MetR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P96194 5.12e-05 45 36 0 76 3 None Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region Azotobacter vinelandii
P25544 6.89e-05 47 25 5 181 3 rbcR RuBisCO operon transcriptional regulator Allochromatium vinosum
A0T0G2 7.53e-05 47 26 1 127 3 rbcR Probable RuBisCO transcriptional regulator Phaeodactylum tricornutum (strain CCAP 1055/1)
P52693 7.58e-05 47 33 1 96 3 ntcB Probable nitrogen assimilation transcriptional activator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P46068 8.05e-05 47 40 0 60 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
P96725 9.51e-05 47 22 6 262 3 ywqM Uncharacterized HTH-type transcriptional regulator YwqM Bacillus subtilis (strain 168)
P52678 0.000139 46 40 0 72 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium leprae (strain TN)
P58332 0.000154 46 23 10 286 3 cbbR HTH-type transcriptional regulator CbbR Rhizobium meliloti (strain 1021)
P42722 0.000156 46 23 6 267 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P37641 0.000161 46 25 8 298 3 yhjC Uncharacterized HTH-type transcriptional regulator YhjC Escherichia coli (strain K12)
O87883 0.000194 45 29 3 181 3 oxyR Probable hydrogen peroxide-inducible genes activator (Fragment) Mycobacterium xenopi
P56885 0.000217 45 22 8 280 3 cbbR HTH-type transcriptional regulator CbbR Sinorhizobium medicae (strain WSM419)
Q55459 0.000258 45 29 1 93 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P27111 0.00031 45 38 1 81 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P20668 0.000343 45 38 0 65 1 gltC Transcriptional dual regulator GltC Bacillus subtilis (strain 168)
P52689 0.00052 44 25 0 108 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
Q8X4M5 0.000563 44 38 1 81 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
P25545 0.000668 44 37 0 64 3 cbbR HTH-type transcriptional regulator CbbR Xanthobacter flavus
P49518 0.000726 44 26 1 127 3 rbcR Probable RuBisCO transcriptional regulator Trieres chinensis
O34685 0.000808 43 36 1 77 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11875
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 529397 - 530293 (strand: 1)
Length 897 (nucleotides) / 298 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_704
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MSKDKALTLESLRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRLLLEAAEKLTSDAEALARGWEPHLTIACEALIPAASLFPLVEKLALKSTTQLTLATEVLAGSWERLEAGRADIVIAPDMHFRSSSEINSRPLYSVVNVYVAAPDHPIHREPEPLSETTRVKYRGIAVADTARERPVLTVLLLDKQRRLTVSSIDDKHRALLAGLGVATMPYPLVEKDIQEGRLKVVGPEYSHETNVIMAWRRDSMGEAKAWCLREIPKLFINK

Flanking regions ( +/- flanking 50bp)

TTAGCCAGTTAATCTGGTGGCGACATTCAAATTTTCTGATTGAGATAATGATGAGTAAAGACAAAGCGTTAACGCTGGAATCATTGCGCGTGATGGATGCTATCGACCGCCGGGGCAGTTTTGCCGCAGCGGCTGATGAGCTTGGGCGGGTGCCGTCCGCCCTGAGCTATACCATGCAGAAACTGGAAGAAGAGTTGGATGTTGTATTATTTGATCGCTCCGGACACCGGACAAAATTTACCAATGTCGGGCGGATGTTGCTGGAGCGCGGGCGTTTACTGCTGGAAGCCGCTGAGAAGCTGACCAGTGATGCAGAAGCGCTTGCCCGCGGCTGGGAGCCGCATCTGACTATTGCCTGCGAAGCGCTGATACCGGCGGCGTCCCTGTTTCCGCTGGTGGAGAAACTGGCGCTGAAATCCACCACACAACTGACGCTGGCGACAGAAGTTCTCGCCGGCTCCTGGGAGAGACTGGAAGCCGGACGGGCAGATATCGTGATTGCGCCGGATATGCATTTCCGCTCATCTTCTGAAATTAACTCCCGCCCGCTCTATTCGGTGGTGAATGTCTATGTGGCGGCACCGGATCACCCTATTCACCGTGAGCCTGAGCCGTTATCAGAGACAACACGGGTAAAATACCGTGGTATAGCGGTGGCTGATACCGCCCGTGAGCGCCCGGTGCTGACGGTTTTGTTGCTGGATAAACAGCGGCGCCTGACCGTCAGTTCAATAGATGATAAACACCGTGCTCTGCTGGCCGGACTGGGTGTGGCAACCATGCCGTATCCGCTGGTGGAAAAAGATATTCAGGAAGGTCGCCTGAAAGTGGTCGGACCGGAATACAGCCATGAAACGAATGTGATAATGGCATGGCGGCGTGACAGCATGGGTGAGGCGAAAGCCTGGTGTTTGCGTGAAATTCCGAAACTGTTTATCAATAAATAAGCCTGATAATAAAAAATACACTAAATCAATAACCTGTCGGATATTTTCCG