Homologs in group_3721

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00350 F4V73_RS00350 26.6 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS18325 F4V73_RS18325 39.3 Morganella psychrotolerans - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_3721

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3721

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67703 6.85e-05 45 34 3 115 1 higA Antitoxin HigA Shigella flexneri
P67701 6.85e-05 45 34 3 115 1 higA Antitoxin HigA Escherichia coli (strain K12)
P67702 6.85e-05 45 34 3 115 3 higA Antitoxin HigA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17395
Feature type CDS
Gene -
Product ImmA/IrrE family metallo-endopeptidase
Location 3818665 - 3819873 (strand: 1)
Length 1209 (nucleotides) / 402 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3721
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF06114 IrrE N-terminal-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5499 Defense mechanisms (V) V Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18831 HTH-type transcriptional regulator / antitoxin HigA - -

Protein Sequence

MNIKVIRTETQHKEYLERIYSLLSMMPTLNSSENDELELLITLVESYENSKYPIEPPDPIDAITFRMHEKGLKQVDLVPYLGTKSRVSEILSRKRPLTVPMIKALSIGLGISTDTLVGIYSEQAKKNTENVDWSKFPVKEMIGRGWISNSVDKIKKSTEDLVKDFINQTAWSTGTVAFKRTLSGDAYSPSTKYALYAWVSRVVQRAREKKPSLGNFDPTTLSTNFLRDLAQLSWFETGPLLAIEFLEKHGIAVIIEPSLKGTRIDGAALKDVDGLPIIGLSLRYDRLDNFWFTLLHEVSHIWKHVHSSETFLDDIDVTSNDKRESEANRLAREAFIPRAVWKRSDAYSSPSKETIDNLSRELKINPAIIAGRIRRESGNYRLFNELIGQGEVSKILESIKVN

Flanking regions ( +/- flanking 50bp)

AGATTTCAGTAAATTAGTAGTTCTTATTACCTCAATAAAGGGTAATGTTGATGAATATTAAAGTTATCCGTACGGAAACTCAACATAAAGAATATCTAGAGCGCATATATTCCTTACTGTCAATGATGCCAACTCTAAACTCTAGCGAAAATGATGAACTGGAATTACTTATTACTCTGGTTGAATCCTATGAAAATTCTAAATATCCTATTGAGCCGCCAGACCCAATTGATGCTATTACTTTCCGTATGCATGAAAAAGGTCTTAAGCAGGTAGATTTGGTTCCTTATTTGGGAACTAAAAGTAGAGTTTCTGAAATATTATCACGGAAAAGACCATTAACAGTACCTATGATAAAGGCATTGTCGATTGGTTTGGGAATTTCAACTGATACGCTTGTTGGTATATATAGTGAACAGGCGAAAAAGAATACTGAAAATGTTGATTGGTCAAAATTTCCTGTAAAAGAAATGATAGGAAGAGGGTGGATATCAAATAGTGTTGATAAAATAAAAAAATCAACGGAAGATTTAGTTAAAGACTTTATTAATCAGACAGCATGGTCTACCGGAACTGTTGCATTTAAAAGAACCCTTTCGGGGGATGCGTACTCACCTTCAACAAAATATGCATTATATGCTTGGGTTAGTAGAGTTGTTCAAAGAGCACGAGAAAAAAAACCTTCACTTGGAAATTTCGATCCAACGACACTCTCTACTAATTTTCTGAGGGATTTAGCTCAGTTAAGTTGGTTTGAAACAGGGCCCTTATTAGCTATAGAATTTCTAGAGAAACATGGTATTGCAGTTATTATTGAACCTAGCTTAAAAGGAACTAGGATTGATGGTGCAGCTTTAAAGGATGTAGATGGTTTACCTATTATTGGATTATCTTTAAGGTATGATCGTCTCGATAACTTCTGGTTTACCTTACTTCATGAAGTATCTCATATTTGGAAGCATGTTCATTCTAGTGAGACATTTTTAGATGATATTGATGTTACTTCAAATGATAAAAGAGAATCCGAGGCAAACAGATTAGCTAGAGAGGCATTTATACCTAGAGCTGTTTGGAAAAGAAGTGATGCATATTCTTCACCATCAAAAGAAACAATTGATAATTTATCCAGAGAACTGAAGATTAATCCTGCAATAATAGCAGGAAGAATTAGACGAGAAAGTGGTAACTATCGTTTGTTTAATGAACTGATAGGTCAAGGAGAGGTTAGCAAGATTTTAGAATCAATCAAAGTAAATTAGTCTTTAGGAGAACAAACTATGTACCCTACGTATGTACCAATTCTTAGAGC