Homologs in group_3721

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS18325 F4V73_RS18325 38.4 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS17395 PMI_RS17395 26.6 Proteus mirabilis HI4320 - ImmA/IrrE family metallo-endopeptidase

Distribution of the homologs in the orthogroup group_3721

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3721

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67703 3.21e-40 134 45 1 135 1 higA Antitoxin HigA Shigella flexneri
P67701 3.21e-40 134 45 1 135 1 higA Antitoxin HigA Escherichia coli (strain K12)
P67702 3.21e-40 134 45 1 135 3 higA Antitoxin HigA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00350
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 79885 - 80301 (strand: 1)
Length 417 (nucleotides) / 138 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3721
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5499 Defense mechanisms (V) V Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18831 HTH-type transcriptional regulator / antitoxin HigA - -

Protein Sequence

MIIIDAIQAANNLINIVPLLGGSHSRKDYEDAVKLVEHLIEHDPDNSLLDMLCTKIDEYEGNAPEFRHFNDKLHESDSSVAVLRTLMDQYNLNTTDFSDEIGSRSFVSRILKGDRVLSLDHMRKLAARFNLPVTIFIK

Flanking regions ( +/- flanking 50bp)

GCTCATGCAGAGTACGACAAGTTGGTCGCGTATTACCGGAGAACAAAAGAATGATTATCATTGATGCTATTCAGGCAGCAAATAACTTAATCAATATTGTCCCGTTACTTGGCGGCAGCCATTCACGAAAAGATTATGAAGATGCGGTAAAACTGGTGGAGCATCTGATTGAGCATGATCCTGACAATTCGTTGCTTGATATGCTGTGTACTAAAATTGATGAGTATGAAGGCAATGCTCCGGAATTCCGCCATTTCAATGATAAACTTCATGAAAGTGACAGTTCAGTTGCGGTTTTGCGGACCTTAATGGATCAATATAATCTTAATACAACGGATTTTTCTGATGAAATCGGCTCCCGTTCTTTTGTCAGCCGGATCCTTAAAGGTGACCGGGTATTGTCTCTGGATCATATGCGCAAGCTTGCCGCCCGTTTTAATCTGCCGGTGACGATTTTTATAAAATGAATCAGCAGTGATAAAAAAATCCCGCAGTGATGTCTCATCTGCGGGATTTT