Homologs in group_1412

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08725 FBDBKF_08725 74.3 Morganella morganii S1 emrA Multidrug resistance efflux pump EmrA
EHELCC_12800 EHELCC_12800 74.3 Morganella morganii S2 emrA Multidrug resistance efflux pump EmrA
NLDBIP_13140 NLDBIP_13140 74.3 Morganella morganii S4 emrA Multidrug resistance efflux pump EmrA
LHKJJB_13415 LHKJJB_13415 74.3 Morganella morganii S3 emrA Multidrug resistance efflux pump EmrA
HKOGLL_11615 HKOGLL_11615 74.3 Morganella morganii S5 emrA Multidrug resistance efflux pump EmrA
F4V73_RS09945 F4V73_RS09945 74.0 Morganella psychrotolerans - efflux RND transporter periplasmic adaptor subunit

Distribution of the homologs in the orthogroup group_1412

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1412

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P94851 1.84e-39 144 31 1 289 3 HP_1488 36 kDa antigen Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZJD1 1.62e-37 139 30 1 289 3 jhp_1381 36 kDa antigen Helicobacter pylori (strain J99 / ATCC 700824)
A8AIZ1 1.32e-24 104 30 4 291 3 CKO_02332 UPF0194 membrane protein CKO_02332 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A9MIT3 7.84e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q8ZQP0 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z879 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella typhi
C0PX06 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella paratyphi C (strain RKS4594)
B5QXS4 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella enteritidis PT4 (strain P125109)
B5FP83 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella dublin (strain CT_02021853)
Q57RE0 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella choleraesuis (strain SC-B67)
B5F095 8e-21 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella agona (strain SL483)
B4TQW1 1.25e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella schwarzengrund (strain CVM19633)
A9MSW1 1.25e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4T074 1.25e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella newport (strain SL254)
B4TC72 1.25e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella heidelberg (strain SL476)
B5BC09 1.29e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella paratyphi A (strain AKU_12601)
Q5PG34 1.29e-20 94 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5R785 4.63e-20 92 30 4 291 3 ybhG UPF0194 membrane protein YbhG Salmonella gallinarum (strain 287/91 / NCTC 13346)
A4W8D7 1.14e-19 91 28 4 291 3 Ent638_1286 UPF0194 membrane protein Ent638_1286 Enterobacter sp. (strain 638)
Q93AA7 1.52e-19 90 27 5 328 3 YP_0975 UPF0194 membrane protein YP_0975 Yersinia pestis
B1JSP3 1.52e-19 90 27 5 328 3 YPK_2900 UPF0194 membrane protein YPK_2900 Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q1CFT7 1.52e-19 90 27 5 328 3 YPN_2816 UPF0194 membrane protein YPN_2816 Yersinia pestis bv. Antiqua (strain Nepal516)
A7FKJ7 1.52e-19 90 27 5 328 3 YpsIP31758_2812 UPF0194 membrane protein YpsIP31758_2812 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q1C912 1.52e-19 90 27 5 328 3 YPA_1093 UPF0194 membrane protein YPA_1093 Yersinia pestis bv. Antiqua (strain Antiqua)
B2K8W1 1.71e-19 90 27 5 328 3 YPTS_1292 UPF0194 membrane protein YPTS_1292 Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q66D37 1.71e-19 90 27 5 328 3 YPTB1212 UPF0194 membrane protein YPTB1212 Yersinia pseudotuberculosis serotype I (strain IP32953)
A1JSL8 1.56e-18 88 25 5 328 3 YE2891 UPF0194 membrane protein YE2891 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8FJN6 1.35e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TJQ3 1.43e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1A936 1.59e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O1:K1 / APEC
B7MQP9 1.59e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O81 (strain ED1a)
B7MGQ3 1.59e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O45:K1 (strain S88 / ExPEC)
Q1RED2 1.76e-17 85 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain UTI89 / UPEC)
Q3Z3Z0 4.51e-17 84 28 2 290 3 ybhG UPF0194 membrane protein YbhG Shigella sonnei (strain Ss046)
Q32I67 6.71e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Shigella dysenteriae serotype 1 (strain Sd197)
B7LJW4 7.47e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B7NA95 7.47e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7NNM5 7.47e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Q8X7Y9 7.47e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O157:H7
B7ULZ2 7.47e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B6I7V1 7.76e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain SE11)
B7M768 7.76e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O8 (strain IAI1)
B7LC78 7.76e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain 55989 / EAEC)
A7ZJK6 7.91e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O139:H28 (strain E24377A / ETEC)
Q0T6G6 8.07e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Shigella flexneri serotype 5b (strain 8401)
B1LM86 8.07e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain SMS-3-5 / SECEC)
B1IXH3 8.07e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZY51 8.07e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O9:H4 (strain HS)
B5YS86 8.07e-17 83 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli O157:H7 (strain EC4115 / EHEC)
P75777 1.31e-16 82 28 2 290 2 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain K12)
B1X7C5 1.31e-16 82 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain K12 / DH10B)
C4ZXW7 1.31e-16 82 28 2 290 3 ybhG UPF0194 membrane protein YbhG Escherichia coli (strain K12 / MC4100 / BW2952)
Q323Z9 2.3e-16 82 28 2 290 3 ybhG UPF0194 membrane protein YbhG Shigella boydii serotype 4 (strain Sb227)
Q83S36 3.07e-16 81 28 2 290 3 ybhG UPF0194 membrane protein YbhG Shigella flexneri
Q9L9D4 6.49e-16 80 28 8 325 3 None UPF0194 membrane protein in asrC 5'region (Fragment) Acidithiobacillus ferridurans
Q8X5R2 1.71e-13 73 26 5 267 3 mdtN Multidrug resistance protein MdtN Escherichia coli O157:H7
P32716 5.28e-13 72 27 5 244 2 mdtN Multidrug resistance protein MdtN Escherichia coli (strain K12)
Q8FAX1 6.93e-13 72 27 5 244 3 mdtN Multidrug resistance protein MdtN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83P86 7.13e-13 72 27 5 245 3 mdtN Multidrug resistance protein MdtN Shigella flexneri
P76185 1.87e-11 67 25 8 274 3 ydhJ Uncharacterized protein YdhJ Escherichia coli (strain K12)
P37626 1.68e-10 64 25 6 283 3 yhiI Uncharacterized protein YhiI Escherichia coli (strain K12)
Q92V44 1.94e-08 58 26 3 287 3 RB0873 UPF0194 membrane protein RB0873 Rhizobium meliloti (strain 1021)
P27303 1.28e-06 53 25 7 280 1 emrA Multidrug export protein EmrA Escherichia coli (strain K12)
P44928 7.29e-06 50 24 13 307 3 emrA Multidrug export protein EmrA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9RQ30 1.2e-05 50 30 7 226 1 farA Fatty acid resistance protein FarA Neisseria gonorrhoeae
Q88F89 1.87e-05 49 25 6 243 1 pvdR Pyoverdine export membrane fusion protein PvdR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9I191 6.15e-05 48 26 8 248 1 pvdR Pyoverdine export membrane fusion protein PvdR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A8A550 0.000862 44 22 8 272 3 aaeA p-hydroxybenzoic acid efflux pump subunit AaeA Escherichia coli O9:H4 (strain HS)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17105
Feature type CDS
Gene -
Product efflux RND transporter periplasmic adaptor subunit
Location 3762520 - 3763491 (strand: 1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1412
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13533 Biotin-lipoyl like
PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1566 Defense mechanisms (V) V Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01993 HlyD family secretion protein - -

Protein Sequence

MKKRAIYLILLMLILIALAVLFRAHNQYLLLQGEVDAPEVIVASKAKGRVIERHIERGDDVKAGQLMITLDSPELNAQVAALEAAKAQAQAQLDLSIHGTREESIRNLQAILSQAQAQATNATKDYQRLSAVANKGYVSANELDSARSRRDVAVQQAKAAQAELDEAKNGDRIELREKYRAALQQAEQQLIELKVQQQDLQVKAPVDGEVGPIPAEVGELFNANSPLATLIRLPEAYFVYNLREDILADIRKGDRITITVPALGNKEVEAEVRYIAPMGDYATKRATRATGDFDLKTFEVRLYPTAQIEGLRPGMSALWRWDK

Flanking regions ( +/- flanking 50bp)

ATAACGCTATCAGTGAGTGTTCTACTTCACTATTAAGGTCTAATCGTTATATGAAAAAAAGAGCCATCTATCTTATTTTATTAATGCTAATACTTATTGCATTAGCCGTTCTTTTCCGCGCGCATAATCAATATTTATTACTGCAAGGTGAAGTGGATGCACCTGAAGTTATTGTGGCCTCTAAAGCCAAAGGACGTGTTATAGAGCGTCATATTGAGCGGGGTGATGATGTTAAAGCGGGGCAATTGATGATCACCTTAGATAGCCCAGAACTCAATGCTCAAGTGGCTGCACTGGAAGCGGCAAAAGCCCAAGCTCAAGCTCAATTAGATCTCTCTATTCACGGTACAAGAGAAGAAAGCATTCGCAATTTACAAGCGATCTTATCTCAGGCGCAAGCACAAGCCACCAATGCAACGAAAGATTATCAGCGTCTTAGTGCGGTCGCCAATAAAGGTTATGTCTCTGCCAATGAGCTTGATAGTGCTCGTAGTCGTCGAGATGTTGCCGTGCAGCAAGCCAAAGCAGCACAAGCTGAATTAGATGAAGCGAAAAATGGTGATCGTATTGAATTACGTGAGAAATACCGAGCCGCACTACAACAAGCAGAGCAGCAATTAATTGAGCTGAAAGTTCAGCAACAAGATTTACAGGTAAAAGCTCCGGTTGACGGCGAAGTGGGGCCTATTCCTGCGGAAGTGGGTGAGCTTTTTAATGCCAATAGCCCATTAGCTACATTAATTCGTCTCCCTGAAGCCTATTTTGTATATAACTTGCGTGAAGATATTTTAGCCGATATCCGCAAAGGCGATCGCATCACCATCACTGTTCCTGCGTTAGGCAATAAAGAAGTGGAAGCAGAAGTTCGCTATATTGCTCCTATGGGAGATTACGCAACGAAAAGAGCGACGCGTGCAACAGGAGATTTCGACTTAAAAACCTTTGAAGTTCGACTGTATCCAACGGCACAAATTGAAGGACTACGTCCTGGTATGAGCGCATTATGGCGTTGGGATAAGTAAGGGCGAATAATGAGAGTAAAGGCAGCTTGGCGTGGTTTTAATAGCGCATT