Homologs in group_3860

Help

1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS17225 F4V73_RS17225 39.2 Morganella psychrotolerans rfaL O-antigen ligase RfaL

Distribution of the homologs in the orthogroup group_3860

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3860

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26471 1.53e-86 272 39 6 398 1 waaL O-antigen ligase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15640
Feature type CDS
Gene rfaL
Product O-antigen ligase RfaL
Location 3475368 - 3476636 (strand: -1)
Length 1269 (nucleotides) / 422 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3860
Orthogroup size 2
N. genomes 2

Actions

Genomic region

Domains

PF04932 O-Antigen ligase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3307 Cell wall/membrane/envelope biogenesis (M) M O-antigen ligase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02847 O-antigen ligase [EC:2.4.99.26] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Protein Sequence

MMLFKDDSKKSLWNLSIIGLYIILIYLPDITRYKNIVMGLIGATALWYLVRDFRTIGQIFKNNLAYALFFLLLAIGYSVVISVEPALSLKEINKPILNGLLLFAIAFPIVLYKETPTAIAKMVMVSFAMGLLVIMAKELAQYYLEYQQNILPFTKKSQLAHREISYALLFFFPIILALWALKKNHSIINWLLLSVVSLLFLFAILGTLARGAWVALAISTLLILIINRQWIFTLLSMGICVALFFGVTQLPNNQFINAKLKHKLSQTNSGLRFDGGTQGSALDLILAQPIKGYGYGNQLYHNVYNQQVKQHKNWVFKKSIGPHNVFLAFWFAGGILGLISLLYFCASFIAQGIQLIRKNQGITRQAALVLLMSFLGVYVLRGLFENAYINQVGILLGLMLALRYSLLNQPSATPTQEDTSVS

Flanking regions ( +/- flanking 50bp)

CCCCACAAACCGCTAGAGCAATATAACATAAAGGACAGTGGCAGCTTATTATGATGTTGTTTAAAGACGATAGTAAAAAATCTTTGTGGAATTTATCCATTATTGGACTTTACATTATATTGATCTACTTACCCGATATCACTCGCTATAAAAATATAGTGATGGGGTTGATTGGTGCAACGGCACTTTGGTATCTGGTGCGTGATTTTCGCACTATTGGTCAGATTTTTAAAAATAATCTCGCCTATGCGCTGTTTTTCTTATTGCTCGCCATTGGCTATTCAGTCGTGATTTCCGTAGAGCCCGCACTGAGTCTAAAAGAGATTAATAAGCCGATTTTAAATGGCTTACTGCTCTTTGCCATTGCGTTTCCCATTGTATTGTATAAAGAAACACCTACGGCAATTGCAAAGATGGTGATGGTGTCATTCGCCATGGGGTTATTGGTGATTATGGCAAAGGAGTTGGCGCAGTATTATTTGGAATATCAGCAAAATATTTTGCCTTTTACAAAAAAAAGTCAATTAGCGCATAGAGAAATCTCTTATGCACTACTATTTTTCTTTCCTATTATATTGGCCTTATGGGCATTGAAAAAAAATCATTCGATAATTAATTGGCTTTTATTAAGTGTGGTTAGCCTATTATTTTTATTTGCAATTTTAGGGACATTAGCACGCGGGGCTTGGGTCGCATTAGCGATTAGTACATTACTTATCTTAATCATTAATCGCCAGTGGATATTTACTTTACTCAGCATGGGTATCTGCGTTGCGCTCTTTTTCGGTGTAACACAATTACCTAATAACCAATTTATTAACGCCAAACTTAAACATAAACTATCGCAAACCAATAGCGGACTAAGATTTGATGGTGGTACCCAAGGTTCAGCCTTAGATTTGATCTTAGCACAACCTATTAAAGGCTATGGTTATGGTAATCAGCTTTACCATAATGTTTATAATCAGCAAGTAAAACAGCATAAAAACTGGGTATTTAAAAAATCCATTGGTCCCCATAATGTATTTTTAGCTTTCTGGTTTGCCGGCGGTATTTTGGGGTTAATAAGTCTACTCTATTTTTGCGCGTCTTTTATCGCTCAGGGTATTCAATTGATCCGCAAAAATCAGGGGATTACTCGCCAAGCAGCGCTGGTGTTATTAATGTCGTTTTTAGGGGTTTATGTACTACGTGGATTATTTGAAAATGCCTATATTAATCAAGTGGGTATTTTATTAGGGTTAATGTTAGCATTGCGCTATTCATTATTAAATCAGCCCTCAGCAACACCGACCCAAGAAGATACATCCGTTAGCTAATCAGTTTATTGATGGTATGTAAAATCGTCTCTGCCCGTTTATCCCAGTTG