Homologs in group_3860

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS15640 PMI_RS15640 39.2 Proteus mirabilis HI4320 rfaL O-antigen ligase RfaL

Distribution of the homologs in the orthogroup group_3860

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3860

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26471 5.3e-84 265 38 4 387 1 waaL O-antigen ligase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17225
Feature type CDS
Gene rfaL
Product O-antigen ligase RfaL
Location 76540 - 77781 (strand: -1)
Length 1242 (nucleotides) / 413 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3860
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF04932 O-Antigen ligase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3307 Cell wall/membrane/envelope biogenesis (M) M O-antigen ligase

Protein Sequence

MIKKSLSHGVNSRGLNTHGLWSLFIVGGYISLLYVTGVTRYKTIFFALIAATALWHIIRYRKACLSQFKNPISLCIGLFTLVIIYGLLISPDWRGSLSDIKNSHFRDVLLMFALIVLVLMKTPQEQVLKMIITAFTAGLLFVCLREIYLYYLDYRQGIMPFTNYNHRDVSDALIIFFPVLIAHWHLMNKRSVWQWAGLLTLGALMLFVLLGTLARGAWLAVLIMYFLAFGLNRNKGMIVAALLVLALGAVAVSQYGLGKDNGYLNKKLIQTDSSHRYENGTQGTAYELVMEKPLKGHGIGRQIYNQTYDAAAIQNPDWTFRTSIGSHNIFLTYWFACGIAGLLGMIYLVFTFSLSGAIAADRRDKLQFQVIITLVTSFLGYIVVRGNFENVHISVLGVLFALLLMATRIEKRT

Flanking regions ( +/- flanking 50bp)

CGCTGGATATGGATCAGCACTTTAACGGGTGTGAAGGGATTTAAACTATCGTGATTAAAAAGTCATTGAGTCATGGAGTAAACAGCCGTGGATTAAACACCCATGGACTGTGGAGCCTGTTTATTGTCGGGGGATATATTTCCCTGCTGTATGTTACAGGGGTCACCCGTTACAAAACGATTTTTTTTGCGCTGATCGCCGCAACGGCGCTCTGGCATATTATCCGGTACCGTAAAGCCTGCTTATCTCAGTTCAAAAACCCGATCTCACTCTGTATCGGGTTATTCACGCTGGTGATAATTTATGGTCTGCTGATTTCACCGGATTGGCGCGGCAGTCTTTCTGATATAAAAAACAGTCACTTCCGTGATGTATTGCTGATGTTTGCCCTGATCGTGCTGGTGTTGATGAAAACACCGCAGGAACAGGTGCTGAAGATGATCATCACTGCATTCACTGCCGGGTTACTGTTCGTCTGCCTGCGGGAGATATATCTGTATTATCTCGATTACCGTCAGGGGATTATGCCGTTTACCAACTATAACCACCGTGATGTTTCTGACGCGCTGATTATTTTCTTCCCGGTACTGATTGCGCACTGGCACCTGATGAATAAGCGCAGTGTATGGCAATGGGCGGGGCTGCTCACGCTGGGCGCACTGATGCTGTTTGTCTTGCTGGGAACCCTGGCACGGGGCGCATGGCTGGCGGTATTGATAATGTATTTCCTGGCATTCGGACTAAACCGTAATAAAGGCATGATTGTGGCAGCACTGCTGGTGCTGGCTCTGGGTGCAGTTGCGGTATCGCAGTATGGTTTAGGAAAAGATAATGGCTACCTGAATAAAAAGCTTATTCAGACTGACAGCAGTCATCGCTATGAAAACGGTACTCAGGGAACGGCATATGAGCTGGTAATGGAAAAACCCTTAAAAGGGCATGGTATAGGGCGGCAAATTTATAACCAGACCTATGATGCTGCCGCGATTCAGAACCCTGACTGGACATTCCGCACCTCTATCGGCTCACATAATATTTTTCTCACTTACTGGTTTGCCTGTGGTATTGCCGGGCTGCTGGGAATGATTTACCTGGTATTTACATTTTCCCTTTCGGGGGCGATTGCTGCCGACAGACGGGATAAATTACAGTTCCAGGTTATTATCACACTGGTCACGTCATTCCTTGGCTACATCGTCGTGCGCGGTAACTTTGAGAATGTGCATATCAGTGTGCTGGGTGTGCTGTTTGCGTTGCTGTTAATGGCAACCAGGATTGAAAAAAGAACATAGCCGGAAAGGCGATTTATTCAGATCAAAAAGGCGGTTTCATCACAGGATGA