COG3307


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3307, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description O-antigen ligase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3307 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3471 FBDBKF_16260 39627 40877 1 O-antigen ligase Morganella morganii S1
1 group_3471 EHELCC_16295 39627 40877 1 O-antigen ligase Morganella morganii S2
2 group_3471 NLDBIP_17045 21293 22543 -1 O-antigen ligase Morganella morganii S4
3 group_3471 LHKJJB_16965 24395 25645 -1 O-antigen ligase Morganella morganii S3
4 group_3471 HKOGLL_16875 39627 40877 1 O-antigen ligase Morganella morganii S5
5 group_3860 F4V73_RS17225 76540 77781 -1 rfaL O-antigen ligase RfaL Morganella psychrotolerans
6 group_3860 PMI_RS15640 3475368 3476636 -1 rfaL O-antigen ligase RfaL Proteus mirabilis HI4320