Homologs in group_3650

Help

3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS13315 F4V73_RS13315 20.5 Morganella psychrotolerans - molecular chaperone
PMI_RS05730 PMI_RS05730 16.8 Proteus mirabilis HI4320 - molecular chaperone
PMI_RS05770 PMI_RS05770 20.9 Proteus mirabilis HI4320 - molecular chaperone

Distribution of the homologs in the orthogroup group_3650

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3650

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28722 4.88e-26 103 28 4 216 3 yhcA Uncharacterized fimbrial chaperone YhcA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15275
Feature type CDS
Gene -
Product fimbria/pilus chaperone family protein
Location 3389033 - 3389707 (strand: -1)
Length 675 (nucleotides) / 224 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3650
Orthogroup size 4
N. genomes 2

Actions

Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Protein Sequence

MKILKGMIFLILLISHFSHASFQLETMTVILDSEEPRKIFNVKNTGSEPILLSTKVSDLDKQHEIAKNIIITPPITRIEPDQSQNINFILKDGIEFDDEQILKASFQGIGVAKVNSTKMPIRQDIAMLIIPKGLTIEREPWKNLEVKQVNNQLILKNNGKQVIRMAPAFSSLPSNNGYSIGQFYIRPQEEIKVDVKEKLTEIQISPLSRYGFKLAGDIKMKVNN

Flanking regions ( +/- flanking 50bp)

ATGAAAAAGTTGATGCAATTTGTAAGTAATACAAAGAGGATAGTCTAATTATGAAAATACTAAAAGGAATGATTTTTCTCATTCTATTAATAAGTCATTTTTCTCATGCTAGTTTTCAATTGGAAACCATGACTGTTATTTTAGATTCAGAAGAGCCAAGAAAGATTTTTAATGTTAAAAATACGGGTAGTGAACCTATTTTATTATCAACAAAAGTCAGCGATTTAGATAAACAACACGAAATAGCAAAAAATATTATTATAACTCCACCTATTACAAGAATAGAGCCAGATCAAAGTCAGAATATTAATTTTATTTTAAAAGACGGTATTGAATTTGATGATGAACAAATTTTAAAAGCCTCTTTCCAAGGTATTGGTGTTGCAAAGGTCAATTCAACAAAAATGCCTATCAGACAAGATATTGCGATGTTAATTATTCCAAAAGGGTTAACCATAGAGCGTGAACCTTGGAAAAATCTAGAAGTAAAACAAGTCAATAATCAATTAATATTAAAGAATAATGGTAAACAAGTTATTCGTATGGCTCCCGCTTTTAGCTCTTTACCAAGCAATAACGGTTATAGTATTGGTCAATTTTATATTCGTCCTCAAGAAGAAATTAAAGTTGATGTAAAAGAAAAGTTAACAGAAATACAAATATCACCTTTAAGTCGTTATGGATTTAAATTAGCAGGTGATATTAAAATGAAAGTTAATAATTAAAATAATTAATATATAAAGCCTTGATATGTTATATCAAGGCTTTTTTATTT