Homologs in group_1716

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11965 FBDBKF_11965 53.2 Morganella morganii S1 hmsP Biofilm formation regulator HmsP
EHELCC_14340 EHELCC_14340 53.2 Morganella morganii S2 hmsP Biofilm formation regulator HmsP
NLDBIP_15435 NLDBIP_15435 53.2 Morganella morganii S4 hmsP Biofilm formation regulator HmsP
LHKJJB_15175 LHKJJB_15175 53.2 Morganella morganii S3 hmsP Biofilm formation regulator HmsP
HKOGLL_14295 HKOGLL_14295 53.2 Morganella morganii S5 hmsP Biofilm formation regulator HmsP
F4V73_RS14690 F4V73_RS14690 54.9 Morganella psychrotolerans - HAMP domain-containing protein

Distribution of the homologs in the orthogroup group_1716

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1716

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37649 2.91e-42 154 39 3 229 1 pdeK Probable cyclic di-GMP phosphodiesterase PdeK Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14035
Feature type CDS
Gene -
Product HAMP domain-containing protein
Location 3115668 - 3116378 (strand: -1)
Length 711 (nucleotides) / 236 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1716
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF17154 Gammaproteobacterial periplasmic sensor domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5000 Signal transduction mechanisms (T) T Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation

Protein Sequence

MKPHLKRSLTIKQMAAVAGVTLVTIAIFISIQLVYLIDQRREDYQNQLFNAAVSIQQPLADALLRSDLNDAKQLIISLKTTGILGKAIVTQPENVQVMNLDFAPKKSVSQFSRWLFGIPVEVTIPLQPLGITSADDKAYTSHLILQADTNRFYRFASNTVALMLTTYLLMGLILTIAISWCINRIMVKPLRHIAVTLNKSNQVSMLSCSESHRDDEIGLLIKGYNQQKSDQKESDI

Flanking regions ( +/- flanking 50bp)

AATACAGTATAATCACCGTTGTTCAAGCATGGTTACTGGAAATAGCACTGATGAAACCTCATCTCAAACGTTCACTAACAATCAAACAGATGGCAGCTGTTGCAGGTGTCACGTTGGTGACTATTGCTATTTTTATTAGTATTCAGCTTGTTTATTTGATTGATCAACGCCGAGAAGATTATCAAAATCAGCTATTTAATGCGGCAGTCAGTATACAACAACCGCTAGCTGATGCGCTATTGCGTTCAGATTTAAATGATGCCAAACAACTGATCATTAGTTTAAAAACGACCGGGATACTGGGTAAAGCGATTGTGACACAACCCGAAAATGTTCAGGTGATGAACTTAGATTTTGCACCGAAAAAATCAGTTTCTCAATTTTCACGTTGGCTGTTTGGCATCCCTGTTGAAGTGACTATCCCTTTACAGCCTTTAGGTATTACCTCCGCTGACGATAAAGCCTATACCAGTCATCTTATTTTACAGGCAGATACTAACCGTTTTTATCGTTTTGCGAGTAATACTGTCGCACTGATGTTGACGACTTATTTATTAATGGGTCTTATCCTCACTATTGCAATTAGCTGGTGTATTAATCGTATTATGGTAAAACCGTTGCGCCACATTGCTGTGACTCTTAATAAAAGTAATCAGGTTTCGATGTTGTCGTGTTCAGAATCTCATCGTGATGATGAGATTGGTTTGCTGATTAAAGGATATAATCAACAAAAATCTGATCAAAAAGAGTCAGATATCTGAACCTTCTTACACCACTATGACTCTAATCACGTGAGTGATTTTATTTTAGC