Homologs in group_1716

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11965 FBDBKF_11965 100.0 Morganella morganii S1 hmsP Biofilm formation regulator HmsP
EHELCC_14340 EHELCC_14340 100.0 Morganella morganii S2 hmsP Biofilm formation regulator HmsP
LHKJJB_15175 LHKJJB_15175 100.0 Morganella morganii S3 hmsP Biofilm formation regulator HmsP
HKOGLL_14295 HKOGLL_14295 100.0 Morganella morganii S5 hmsP Biofilm formation regulator HmsP
F4V73_RS14690 F4V73_RS14690 88.1 Morganella psychrotolerans - HAMP domain-containing protein
PMI_RS14035 PMI_RS14035 53.2 Proteus mirabilis HI4320 - HAMP domain-containing protein

Distribution of the homologs in the orthogroup group_1716

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1716

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37649 1.79e-48 171 41 5 241 1 pdeK Probable cyclic di-GMP phosphodiesterase PdeK Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_15435
Feature type CDS
Gene hmsP
Product Biofilm formation regulator HmsP
Location 96365 - 97072 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)

Contig

Accession ZDB_531
Length 138641 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1716
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF17154 Gammaproteobacterial periplasmic sensor domain

Protein Sequence

MRVKVRKSLTIKQMSVVAAVTLVTIALFMTLLLSHLIQQRKDDYINQLYNSSVQVRKPLADALLGSDLNAIKSTLITLRASGILGRAIVMTPENVQVISLDFATHRPIPGTAKMIFGIPVEIKVPLYAYGVAHTGKPPQGYLILQVDDNRIYRFAMNVVALMVTSYLLLALVLVIAISWCINRLIVRPLRNMARELNSDEPAEQLSCSAYHEDDELGLLAKGYRNQLNKHKTESS

Flanking regions ( +/- flanking 50bp)

TGCGTATGGCGAAAGATGTGATAACTGAATTGTAACGAAAGGCGTGGAATATGCGTGTAAAAGTCAGAAAGTCACTGACTATCAAACAGATGTCAGTTGTCGCTGCGGTGACTTTGGTGACGATCGCACTTTTTATGACGCTTCTGTTATCACATCTGATACAACAGCGGAAAGATGATTACATCAATCAGCTTTATAATTCGTCAGTACAGGTCAGGAAACCGCTGGCAGATGCCTTGTTAGGGTCGGATTTAAACGCAATAAAATCGACGCTGATAACATTGCGGGCCAGCGGGATTTTAGGACGCGCGATTGTGATGACGCCGGAAAATGTTCAGGTGATAAGCCTGGATTTTGCCACACACCGTCCTATTCCCGGCACAGCAAAAATGATTTTCGGGATCCCGGTTGAGATTAAGGTTCCGCTTTACGCCTACGGCGTGGCACATACCGGCAAACCCCCGCAGGGTTATCTTATTCTTCAGGTGGATGATAACCGCATATACCGCTTCGCGATGAATGTCGTGGCACTGATGGTGACCAGTTATCTGTTACTGGCACTGGTGCTGGTGATCGCGATAAGCTGGTGTATTAACCGCCTGATCGTGCGGCCGCTGCGTAATATGGCCCGTGAGCTGAACAGTGATGAGCCTGCAGAGCAGCTCAGTTGTTCAGCATATCATGAGGATGATGAACTTGGTTTGCTGGCGAAGGGGTACCGGAACCAGCTGAACAAACATAAAACGGAGTCATCATAAAACTTCCCGGACGGTTTGCTGTCTAAACCCAGACGAATCAAAAGGGCGTC