Homologs in group_1756

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11965 FBDBKF_11965 88.1 Morganella morganii S1 hmsP Biofilm formation regulator HmsP
EHELCC_14340 EHELCC_14340 88.1 Morganella morganii S2 hmsP Biofilm formation regulator HmsP
NLDBIP_15435 NLDBIP_15435 88.1 Morganella morganii S4 hmsP Biofilm formation regulator HmsP
LHKJJB_15175 LHKJJB_15175 88.1 Morganella morganii S3 hmsP Biofilm formation regulator HmsP
HKOGLL_14295 HKOGLL_14295 88.1 Morganella morganii S5 hmsP Biofilm formation regulator HmsP
PMI_RS14035 PMI_RS14035 54.9 Proteus mirabilis HI4320 - HAMP domain-containing protein

Distribution of the homologs in the orthogroup group_1756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37649 1.65e-49 174 42 4 236 1 pdeK Probable cyclic di-GMP phosphodiesterase PdeK Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14690
Feature type CDS
Gene -
Product HAMP domain-containing protein
Location 174103 - 174810 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000004
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1756
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF17154 Gammaproteobacterial periplasmic sensor domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2770 Signal transduction mechanisms (T) T HAMP domain

Protein Sequence

MRVKVKKSLTIKQMSVVAVVTLVTVALFITLQLSHLIQQRKDDYTNQLFNSSVQVRKPLADALLGSDLNEIKSILITLRASGILGRAIVMTPDNVQVISLDFATYRPIPAAAKMIFGIPVEIRVPLYAYGVAHIAKPPQGYLILQVDDNRIYRFAMNTLALMVTSYLLLAFVLVIAISWCINRLMVRPLRNMARELNSAEPAEMLSCSPYHEDDEIGLLAKGYQNQLNKHKSGPS

Flanking regions ( +/- flanking 50bp)

TGCGTATGACGAAAGATGTGATAACTGAATTGTAACGAAAGGCGTGAAATATGCGTGTAAAAGTCAAAAAGTCGCTGACAATTAAGCAAATGTCAGTTGTTGCAGTAGTGACTTTGGTGACTGTCGCACTTTTTATTACCCTTCAGTTATCGCATTTGATACAACAGCGGAAAGATGATTACACCAATCAGCTTTTTAATTCGTCAGTGCAGGTCAGAAAACCGTTGGCAGATGCATTGTTAGGATCTGATTTAAATGAAATTAAATCCATACTGATAACATTGCGTGCCAGTGGTATTTTAGGTCGGGCAATCGTGATGACACCGGATAATGTTCAGGTTATCAGCCTGGATTTCGCCACATACCGGCCTATTCCGGCTGCAGCAAAAATGATCTTCGGGATTCCGGTTGAAATCCGGGTTCCGCTATACGCATACGGCGTGGCACATATTGCAAAACCCCCGCAGGGGTATCTTATTCTTCAGGTGGATGATAACCGGATATACCGCTTCGCAATGAATACATTGGCACTGATGGTAACCAGTTATCTGTTACTGGCATTTGTCCTGGTGATCGCGATAAGTTGGTGTATTAACCGTCTGATGGTGCGCCCGTTACGTAATATGGCCCGTGAGCTGAACAGCGCAGAGCCGGCAGAAATGCTCAGTTGTTCACCGTATCATGAGGATGATGAGATTGGTTTGTTAGCAAAAGGCTATCAAAATCAGCTTAATAAACATAAATCAGGGCCATCATGAAAACTTCCCGGTCAGTTTGCTGTCTAAACTCAGACGAGTCGTAAGGACGT