Homologs in group_292

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07130 FBDBKF_07130 32.1 Morganella morganii S1 pflB formate C-acetyltransferase
EHELCC_03840 EHELCC_03840 32.1 Morganella morganii S2 pflB formate C-acetyltransferase
NLDBIP_03840 NLDBIP_03840 32.1 Morganella morganii S4 pflB formate C-acetyltransferase
LHKJJB_09670 LHKJJB_09670 32.1 Morganella morganii S3 pflB formate C-acetyltransferase
HKOGLL_09305 HKOGLL_09305 32.1 Morganella morganii S5 pflB formate C-acetyltransferase
F4V73_RS01315 F4V73_RS01315 32.2 Morganella psychrotolerans pflB formate C-acetyltransferase
PMI_RS03470 PMI_RS03470 32.7 Proteus mirabilis HI4320 pflB formate C-acetyltransferase

Distribution of the homologs in the orthogroup group_292

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_292

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q30W70 0.0 1117 60 1 850 1 cutC Choline trimethylamine-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q30W70 1.46e-24 114 24 8 399 1 cutC Choline trimethylamine-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
E5Y378 5.8e-142 452 34 15 811 1 islA Isethionate sulfite-lyase Bilophila wadsworthia (strain 3_1_6)
E5Y378 2.04e-22 107 29 2 221 1 islA Isethionate sulfite-lyase Bilophila wadsworthia (strain 3_1_6)
P32674 6.59e-141 447 34 11 794 3 pflD Probable dehydratase PflD Escherichia coli (strain K12)
P32674 4.29e-12 74 30 7 196 3 pflD Probable dehydratase PflD Escherichia coli (strain K12)
Q312S2 5.2e-135 433 33 13 791 2 islA Isethionate sulfite-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q312S2 1.21e-21 105 27 3 255 2 islA Isethionate sulfite-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
B8J0R1 1.08e-131 424 32 12 801 1 islA Isethionate sulfite-lyase Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
B8J0R1 2.53e-21 104 25 3 255 1 islA Isethionate sulfite-lyase Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
Q727N1 1.56e-131 424 33 11 787 1 iseG Isethionate sulfite-lyase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q727N1 1.48e-19 98 26 3 255 1 iseG Isethionate sulfite-lyase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
E5Y7I4 2.65e-130 421 33 14 808 1 hpsG (2S)-3-sulfopropanediol sulfolyase Bilophila wadsworthia (strain 3_1_6)
E5Y7I4 6.94e-27 122 27 4 286 1 hpsG (2S)-3-sulfopropanediol sulfolyase Bilophila wadsworthia (strain 3_1_6)
A0A031WDE4 1.12e-126 410 33 16 798 1 pflD Trans-4-hydroxy-L-proline dehydratase Clostridioides difficile
A0A031WDE4 1.83e-16 88 23 12 412 1 pflD Trans-4-hydroxy-L-proline dehydratase Clostridioides difficile
A0A318FL05 1.05e-121 397 32 16 804 1 hpfG (2S)-3-sulfopropanediol dehydratase Klebsiella oxytoca
A0A318FL05 4.09e-08 61 23 3 194 1 hpfG (2S)-3-sulfopropanediol dehydratase Klebsiella oxytoca
P75793 1.06e-113 375 31 18 815 3 ybiW Probable dehydratase YbiW Escherichia coli (strain K12)
P75793 4.08e-18 94 24 9 388 3 ybiW Probable dehydratase YbiW Escherichia coli (strain K12)
A0A100YXA1 6.67e-96 329 30 20 850 1 AUL39_03420 Indoleacetate decarboxylase Tractidigestivibacter scatoligenes
A0A100YXA1 6.2e-17 90 30 3 193 1 AUL39_03420 Indoleacetate decarboxylase Tractidigestivibacter scatoligenes
O87943 4.73e-83 293 28 23 837 1 bssA Benzylsuccinate synthase alpha subunit Thauera aromatica
O87943 1.87e-09 65 25 8 299 1 bssA Benzylsuccinate synthase alpha subunit Thauera aromatica
Q84F16 5e-75 270 28 13 672 1 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile
Q84F16 0.000205 49 25 0 124 1 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile
Q18CP5 1.29e-74 269 28 13 672 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain 630)
Q18CP5 0.000205 49 25 0 124 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain 630)
C9YHW1 1.46e-74 269 28 13 672 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain R20291)
C9YHW1 0.0002 49 25 0 124 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain R20291)
C9XIS5 1.46e-74 269 28 13 672 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain CD196)
C9XIS5 0.0002 49 25 0 124 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain CD196)
Q38HX4 2.68e-74 268 29 20 757 1 csdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridium scatologenes
Q8CTX6 5.38e-27 122 21 13 599 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HKH9 9.89e-27 121 21 13 599 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P42632 2.26e-26 120 24 23 613 1 tdcE PFL-like enzyme TdcE Escherichia coli (strain K12)
P09373 7.8e-26 118 23 19 563 1 pflB Formate acetyltransferase 1 Escherichia coli (strain K12)
P43753 8.89e-26 118 22 16 561 3 pflB Formate acetyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7A1W9 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MW2)
Q6GCQ0 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MSSA476)
Q6GK90 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MRSA252)
Q7A7X6 3.13e-25 116 21 13 599 1 pflB Formate acetyltransferase Staphylococcus aureus (strain N315)
Q99WZ7 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF4 3.13e-25 116 21 13 599 1 pflB Formate acetyltransferase Staphylococcus aureus (strain COL)
Q2YV53 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D8 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK44 3.13e-25 116 21 13 599 3 pflB Formate acetyltransferase Staphylococcus aureus (strain USA300)
P37836 1.86e-21 96 30 3 191 2 PFL Formate acetyltransferase (Fragment) Chlamydomonas reinhardtii
Q46266 3.44e-20 100 30 6 241 3 pfl Formate acetyltransferase Clostridium pasteurianum
P13316 0.00025 45 35 0 64 3 grcA Autonomous glycyl radical cofactor Enterobacteria phage T4
A8GI38 0.000608 44 32 0 75 3 grcA Autonomous glycyl radical cofactor Serratia proteamaculans (strain 568)
Q6LUP6 0.00075 44 36 0 58 3 grcA Autonomous glycyl radical cofactor Photobacterium profundum (strain SS9)
A1JKI9 0.000812 43 34 0 64 3 grcA Autonomous glycyl radical cofactor Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
C3LQD3 0.000842 43 36 0 61 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain M66-2)
Q9KPK6 0.000842 43 36 0 61 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F5R7 0.000842 43 36 0 61 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13385
Feature type CDS
Gene cutC
Product choline trimethylamine-lyase
Location 2965296 - 2968724 (strand: -1)
Length 3429 (nucleotides) / 1142 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_292
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01228 Glycine radical
PF02901 Pyruvate formate lyase-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1882 Energy production and conversion (C) C Pyruvate-formate lyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20038 choline trimethylamine-lyase [EC:4.3.99.4] - -

Protein Sequence

MAKYSLTPRVKMLAERLVSRNSSISTERATIFDSLDNNIAGVPQAIKPAQRFYQFIRHFPSYIAQDELIIGSQSSTPRGAIFHSEEEVRSDSIYRFLSINNSVTSPDYMLVVNQGFLAIKAQLEDRMRSIGSAVNRSSMDEANFCKSAIYACDAALYFAQLLSAKAENLAAMEGNPYRKAELLESAAILRKVPAKPAETFKEAVQVFYLLQLILHLENGSYAINPMGFDKALYPFYQRDIDQGRLTPAQAYEIVESLWLKLAELSEVRATKEVDGYPMFDAMTQGIDINDPRVSINELSEMLLSARANLSALHSSLQVRLYNGRMNTPPQYASPSANVVTPATANGELTVMEGLTPRLQRLRNRYLEARPSVSIYRALAFTEIARNNPGLPPILLRAKAFRRACETAPILIQDEELIVGHPCGKPRAGAFSPDIAWRWVRDELDTMSTRPQDPFQISEEDKKVIREEIVPFWEGRSLDEICEAQYREAGVWEFSGETFVSDLSYHQINGGGDTCPGYDVLLFTKGMNGIKADAQAKLAELSMENPADIDRIYFYKASIESCEGVIAYAHRIAEHARELASKESDPQRREELLTIAQVNENVPANPPKTLQEALQSIWTVESLFEVEENQTGLSLGRLDQYCFPMYENDIKTGRLTREQALEMMQAFIIKCAELMWMSSELGAKYFAGYQPFINLTVGGQKRSGGDACNDLTYLIMDAVRFVKVYQPSLACRIHNQSPQQYMEKIVDVVKAGMGFPACHFDDSHIKMMLRKGFDFEDARDYCLMGCVEPQKSGRIYQWTSTGYTQWPIAIEFVLNRGRMVLFDSYQGLDTGDLRDLRTYEDFDRAVKEQVAHIIRLSAIGTVISQRVHRDIAPKPLMSLLVEGCMEQGKDVTAGGAMVNHGPGLIFSGLATYVDSMAAIRKLVYEDKKYTLEQIRDGLLANFEGHEELLRDCLNAPKFGNDDDVVDQYALDITEWTERECRKYKMLYSTFSHGTLSISNNTPIGELTAATPNGRLAWKPLSDGISPTQGADKHGPTAIIKSISKMNVETMNIGMVHNFKFLKGLLDTNEGRQGLITLLRTASILGNGQMQFSYVDNEVLKKAQLEPEKYRDLIVRVAGYSAYFVELCKEVQDEIISRTVIEKF

Flanking regions ( +/- flanking 50bp)

GCTCAATTAATACCGATTAGGTCTAGTAAAGAACATCAGGAGAGCCTCACATGGCCAAATATTCTTTGACGCCACGCGTAAAAATGCTGGCAGAACGTTTAGTTTCACGTAACAGTTCTATTAGCACAGAGCGTGCGACGATTTTTGATTCATTAGATAACAATATTGCCGGTGTGCCCCAAGCGATTAAACCTGCACAACGCTTTTATCAGTTTATTCGTCATTTTCCAAGCTATATCGCTCAAGATGAGCTCATTATCGGTAGCCAATCCTCAACACCACGTGGTGCGATTTTCCACAGCGAAGAAGAAGTGCGTAGTGACTCTATTTATCGCTTTTTAAGTATCAATAATAGCGTTACATCACCTGATTATATGCTGGTGGTGAATCAAGGTTTCTTAGCCATCAAAGCACAACTTGAAGATAGAATGAGAAGCATTGGTAGTGCGGTAAATCGTAGCAGTATGGATGAAGCCAATTTCTGCAAATCGGCGATTTATGCATGTGATGCGGCACTTTATTTTGCACAACTACTGTCAGCTAAAGCAGAAAATTTAGCCGCAATGGAAGGTAATCCATACCGTAAAGCTGAATTATTAGAAAGTGCGGCTATTTTACGTAAAGTACCCGCCAAACCAGCAGAAACCTTTAAAGAAGCGGTACAAGTTTTCTATTTATTACAGCTTATTCTTCATCTGGAGAATGGTAGCTACGCTATCAACCCAATGGGCTTTGATAAAGCACTATACCCATTCTATCAACGTGATATTGACCAAGGCCGTTTAACGCCAGCACAAGCTTATGAGATTGTTGAAAGTCTTTGGCTAAAACTGGCTGAGCTATCCGAAGTGCGCGCAACGAAAGAAGTCGATGGCTATCCGATGTTTGATGCCATGACCCAAGGTATCGATATTAACGATCCTCGCGTCAGTATTAACGAACTTTCAGAAATGTTGTTATCAGCGCGCGCTAATTTATCAGCATTACACAGTTCACTACAAGTCCGTTTATATAACGGTCGTATGAATACACCACCGCAATATGCTTCACCTTCAGCCAATGTTGTTACACCGGCGACAGCAAATGGTGAGTTGACTGTAATGGAAGGCTTAACTCCCCGTCTACAGCGCCTGCGTAATCGTTATTTAGAGGCTCGTCCTAGTGTTTCAATTTATAGAGCATTAGCCTTTACTGAAATTGCTCGCAATAATCCTGGTTTACCCCCTATTTTATTGCGTGCTAAAGCTTTCCGCCGTGCTTGTGAAACCGCACCTATCTTAATTCAAGATGAAGAGCTTATTGTGGGACATCCTTGTGGGAAACCGCGTGCTGGCGCTTTCTCTCCTGATATCGCATGGCGTTGGGTACGTGATGAACTCGACACCATGAGCACGCGCCCACAAGATCCATTCCAAATTTCAGAAGAAGACAAAAAAGTCATTCGTGAAGAGATAGTGCCATTTTGGGAAGGTCGCTCTTTAGATGAAATTTGTGAAGCGCAATACCGTGAAGCGGGTGTATGGGAATTCAGTGGCGAAACCTTTGTCAGCGATCTCTCTTATCATCAAATTAATGGTGGTGGTGATACTTGCCCCGGTTATGACGTATTGTTATTCACCAAAGGGATGAACGGTATTAAAGCCGATGCACAAGCGAAATTGGCTGAATTAAGCATGGAAAATCCTGCTGATATTGACCGTATCTATTTCTATAAAGCGTCGATTGAAAGTTGTGAAGGGGTTATCGCTTATGCTCATCGTATTGCCGAGCATGCCCGTGAATTAGCCTCTAAAGAGAGTGATCCACAACGTCGTGAAGAGTTATTGACCATTGCTCAAGTCAATGAAAATGTTCCTGCTAATCCACCAAAAACATTGCAAGAAGCACTGCAAAGTATCTGGACTGTAGAATCATTGTTTGAAGTTGAAGAGAACCAAACGGGACTTTCTTTAGGTCGCTTAGATCAATACTGTTTCCCAATGTATGAAAACGACATTAAAACAGGTCGTTTAACGCGTGAACAAGCACTGGAAATGATGCAGGCCTTTATCATCAAATGTGCCGAATTAATGTGGATGTCTAGTGAACTTGGCGCAAAATATTTTGCCGGTTATCAACCCTTTATCAACTTAACGGTGGGGGGACAGAAACGCTCAGGTGGCGATGCTTGTAACGATTTAACTTACTTGATTATGGACGCAGTACGCTTTGTGAAAGTGTATCAACCTTCGCTGGCTTGTCGTATCCATAACCAATCACCACAGCAATATATGGAAAAAATCGTTGATGTGGTCAAAGCGGGAATGGGCTTCCCTGCCTGTCACTTCGATGATTCTCATATCAAGATGATGTTGCGCAAAGGCTTCGACTTTGAAGATGCACGCGATTACTGCTTGATGGGCTGTGTTGAACCACAAAAATCAGGTCGTATCTATCAATGGACATCAACGGGTTATACCCAGTGGCCAATTGCCATTGAATTTGTATTAAATCGTGGTCGTATGGTGCTGTTTGATAGCTACCAAGGCTTAGACACCGGCGATTTACGTGATTTACGTACTTATGAGGATTTCGATCGCGCGGTTAAAGAGCAAGTCGCACATATTATTCGTTTATCAGCAATTGGTACGGTTATCAGCCAGCGCGTTCACCGTGACATTGCCCCAAAACCACTCATGTCGCTATTGGTTGAAGGTTGTATGGAGCAAGGTAAAGACGTGACAGCGGGTGGTGCGATGGTTAACCACGGACCGGGTCTGATCTTCTCTGGTTTAGCCACTTATGTCGATTCTATGGCGGCAATTCGCAAACTGGTTTATGAAGACAAAAAATATACCTTAGAGCAAATACGTGACGGCTTATTAGCTAATTTTGAAGGGCACGAAGAGTTACTGCGTGACTGTTTAAATGCACCGAAATTTGGTAACGACGATGATGTTGTTGACCAATATGCGTTAGACATTACCGAATGGACTGAACGTGAATGCCGTAAATATAAAATGCTCTACTCCACATTTAGTCACGGTACGTTATCTATCTCTAATAACACGCCAATTGGTGAATTAACCGCAGCAACACCAAACGGTCGTTTAGCATGGAAACCATTATCAGATGGGATCAGCCCTACACAGGGTGCCGATAAACATGGCCCAACTGCCATCATTAAATCCATCAGCAAGATGAATGTTGAAACCATGAATATCGGTATGGTTCATAACTTTAAATTCCTCAAAGGCTTGCTAGATACCAATGAAGGACGCCAAGGATTAATTACCTTATTAAGAACTGCCTCTATTTTGGGTAATGGTCAGATGCAATTTAGCTATGTCGATAATGAAGTACTGAAAAAAGCCCAATTAGAGCCTGAAAAGTACCGCGATTTAATTGTCCGGGTTGCTGGCTACAGTGCGTACTTCGTTGAATTATGTAAAGAAGTTCAGGATGAAATTATTAGTCGTACAGTGATTGAGAAATTCTGATCATAGACCTAAGGAGGGCTAAGAGTCCTCCCTATTAATCGCGACAAGAC