COG1882


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1882, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Pyruvate-formate lyase
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG1882 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_292 FBDBKF_07130 95104 97386 -1 pflB formate C-acetyltransferase Morganella morganii S1
1 group_292 EHELCC_03840 88800 91082 1 pflB formate C-acetyltransferase Morganella morganii S2
2 group_292 NLDBIP_03840 88596 90878 1 pflB formate C-acetyltransferase Morganella morganii S4
3 group_292 LHKJJB_09670 88710 90992 1 pflB formate C-acetyltransferase Morganella morganii S3
4 group_292 HKOGLL_09305 100060 102342 -1 pflB formate C-acetyltransferase Morganella morganii S5
5 group_292 F4V73_RS01315 282838 285120 -1 pflB formate C-acetyltransferase Morganella psychrotolerans
6 group_292 PMI_RS03470 770068 772350 -1 pflB formate C-acetyltransferase Proteus mirabilis HI4320
7 group_292 PMI_RS13385 2965296 2968724 -1 cutC choline trimethylamine-lyase Proteus mirabilis HI4320