Homologs in group_1462

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09355 FBDBKF_09355 48.3 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_10055 EHELCC_10055 48.3 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_10400 NLDBIP_10400 48.3 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_10955 LHKJJB_10955 48.3 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_14015 HKOGLL_14015 48.3 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS10610 F4V73_RS10610 48.6 Morganella psychrotolerans - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_1462

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1462

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69343 3.76e-30 115 37 2 171 1 invF Invasion protein InvF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P69342 3.76e-30 115 37 2 171 3 invF Invasion protein InvF Salmonella typhi
P0A2S8 2.91e-23 96 31 6 198 3 mxiE Transcriptional regulator MxiE Shigella sonnei
P0A2S7 2.91e-23 96 31 6 198 4 mxiE Transcriptional regulator MxiE Shigella flexneri
Q6GKK1 0.000116 46 32 0 81 4 SAR0107 Uncharacterized HTH-type transcriptional regulator SAR0107 Staphylococcus aureus (strain MRSA252)
Q6GD21 0.000116 46 32 0 81 4 SAS0078 Uncharacterized HTH-type transcriptional regulator SAS0078 Staphylococcus aureus (strain MSSA476)
Q8NYT6 0.000116 46 32 0 81 4 MW0077 Uncharacterized HTH-type transcriptional regulator MW0077 Staphylococcus aureus (strain MW2)
Q99XB1 0.00012 46 32 0 81 4 SAV0101 Uncharacterized HTH-type transcriptional regulator SAV0101 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A882 0.00012 46 32 0 81 4 SA0097 Uncharacterized HTH-type transcriptional regulator SA0097 Staphylococcus aureus (strain N315)
Q936F1 0.000183 46 32 0 81 4 None Uncharacterized HTH-type transcriptional regulator Staphylococcus aureus
Q5HJR8 0.000193 45 32 0 81 4 SACOL0084 Uncharacterized HTH-type transcriptional regulator SACOL0084 Staphylococcus aureus (strain COL)
P28816 0.000221 43 26 0 79 1 tetD Transposon Tn10 TetD protein Escherichia coli
B7LVD8 0.000299 44 27 1 97 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
G3XCU2 0.000708 43 30 0 86 4 argR HTH-type transcriptional regulator ArgR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P26993 0.00079 43 29 5 120 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13290
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 2949698 - 2950453 (strand: -1)
Length 756 (nucleotides) / 251 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1462
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2169 Replication, recombination and repair (L) L Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains

Protein Sequence

MLINDIKISGDKNILSGNLLFMCIPLNDEYPIRIYDDKTTKIIKGKAFIYNSKNENVIFQSENQSWRIEKRSFFICARLLAFIDYARDFSKMTAVGTNFDINQQIFYIKEGSGTLEHLIINEALKDESQLEPLFVTIRHSESYWLILHLISYLDEKKSNIAQIGERYGVSGTHFRRLCKRYLGNCGKSQLRSWRAASSILTTLSTDESLTQIAVDNGFSSASHFSNEIKTLFGITPTEFRRIGQYLYEHKK

Flanking regions ( +/- flanking 50bp)

TGTTTTTTTGAACCCTTAATAGATTATAAGTATAGGCTGAGGTATTTACCATGTTAATAAATGATATAAAAATAAGTGGCGATAAAAATATTTTATCAGGGAATTTATTATTCATGTGCATTCCTTTAAATGATGAATATCCAATAAGAATATACGATGATAAAACGACTAAAATTATAAAGGGAAAGGCTTTTATTTATAATTCAAAAAATGAAAATGTTATTTTTCAATCAGAAAATCAGTCATGGCGTATTGAAAAGAGATCATTTTTTATTTGTGCCAGATTATTGGCATTTATTGATTATGCTAGAGATTTTTCAAAAATGACAGCAGTTGGCACTAATTTTGATATTAATCAACAAATTTTTTATATAAAAGAGGGGAGTGGAACATTAGAACATCTGATTATTAATGAGGCACTGAAAGATGAAAGCCAATTAGAACCTCTTTTTGTGACAATAAGACACAGTGAAAGTTACTGGCTTATATTACATCTGATTAGTTATTTGGATGAGAAAAAAAGCAATATTGCACAAATAGGTGAACGATATGGTGTATCAGGGACACATTTTAGACGGCTGTGTAAACGTTATTTAGGTAATTGTGGTAAAAGTCAATTACGTTCATGGCGTGCGGCATCTTCTATTTTGACAACGCTATCAACAGATGAATCATTGACTCAGATTGCAGTCGATAATGGTTTTAGTTCAGCATCTCATTTTTCTAATGAAATTAAGACATTATTTGGTATTACACCAACTGAATTTCGGCGAATTGGCCAATATCTTTATGAACATAAAAAATAAAATTTACTGTATCATTGGAATTATCATTTTTTATAGCTTCTTTTTGCCAA