Orthogroup:group_1462


Homologs in group_1462

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09355 FBDBKF_09355 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_10055 EHELCC_10055 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_10400 NLDBIP_10400 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_10955 LHKJJB_10955 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_14015 HKOGLL_14015 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS10610 F4V73_RS10610 Morganella psychrotolerans - AraC family transcriptional regulator
PMI_RS13290 PMI_RS13290 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_1462 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1462 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1462

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1462.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 1
3 helix-turn-helix domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2169 1 L Replication, recombination and repair (L) Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains
COG2207 6 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 7 Helix-turn-helix domain

Annotations of the 15 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional activator RhaS 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator ExsA 1
Invasion protein InvF 2
Transcriptional regulator MxiE 2
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1

Protein length

Min length 138
Max length 251
Mean length (sd) 205.6 (33.5)
Median length 210.0

Protein length distribution