VFG003519


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG003519, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 1 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein EscR/YscR/HrcR family type III secretion system export apparatus protein
VF ID VF1025
Category Effector delivery system
Protein ID WP_032903070
Characteristics Ysa system is encoded on the chromosome of highly virulent Y. enterocolitica biovar 1B strains
Function Plays a role in colonization of the gut and the subsequent systemic phase of the disease
Mechanism Responsible for secreting at least 15 Ysps (Yersinia secreted proteins); also been shown to export some of the Yops
Vf_category_id VFC0086

Occurence in the database

VFG003519 is associated with 1 different proteins (see tab "Protein list" and "Profile")
The 1 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_316 PMI_RS13245 2939875 2940534 -1 EscR/YscR/HrcR family type III secretion system export apparatus protein Proteus mirabilis HI4320