Homologs in group_84

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04025 FBDBKF_04025 33.6 Morganella morganii S1 traD type IV conjugative transfer system coupling protein TraD
FBDBKF_19855 FBDBKF_19855 36.0 Morganella morganii S1 traD type IV conjugative transfer system coupling protein TraD
EHELCC_06510 EHELCC_06510 33.6 Morganella morganii S2 traD type IV conjugative transfer system coupling protein TraD
EHELCC_10580 EHELCC_10580 36.0 Morganella morganii S2 traD type IV conjugative transfer system coupling protein TraD
NLDBIP_06835 NLDBIP_06835 33.6 Morganella morganii S4 traD type IV conjugative transfer system coupling protein TraD
NLDBIP_10925 NLDBIP_10925 36.0 Morganella morganii S4 traD type IV conjugative transfer system coupling protein TraD
LHKJJB_06370 LHKJJB_06370 33.6 Morganella morganii S3 traD type IV conjugative transfer system coupling protein TraD
LHKJJB_10430 LHKJJB_10430 36.0 Morganella morganii S3 traD type IV conjugative transfer system coupling protein TraD
HKOGLL_04560 HKOGLL_04560 33.6 Morganella morganii S5 traD type IV conjugative transfer system coupling protein TraD
HKOGLL_16595 HKOGLL_16595 36.0 Morganella morganii S5 traD type IV conjugative transfer system coupling protein TraD
PMI_RS12780 PMI_RS12780 33.6 Proteus mirabilis HI4320 traD type IV conjugative transfer system coupling protein TraD

Distribution of the homologs in the orthogroup group_84

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_84

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12235
Feature type CDS
Gene traD
Product conjugative transfer system coupling protein TraD
Location 2700609 - 2702429 (strand: -1)
Length 1821 (nucleotides) / 606 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_84
Orthogroup size 12
N. genomes 6

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Genomic region

Domains

PF10412 Type IV secretion-system coupling protein DNA-binding domain
PF12696 TraM recognition site of TraD and TraG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3505 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12071 conjugal transfer pilus assembly protein TraD - -

Protein Sequence

MKENAYEMPWRTNYEAMAAAGWLVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYRLYKLQKGLKGKPLAFMALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLIVGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEIASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVNDSRLITDSGRIINNAQVAYIGLDSLTDAMVGSAIGSLLLSDLTAVAGDRYNYGVDNRPVNIFIDEAAEVVNDPFIQLLNKGRGAKMRCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGERLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA

Flanking regions ( +/- flanking 50bp)

AATCCATTTGAACTTAAGTGGATTGCAAACGGTTATTTTGCGGAGCATGAATGAAAGAAAACGCATACGAAATGCCCTGGCGCACGAACTATGAGGCCATGGCAGCAGCAGGTTGGCTGGTTGGGGCCACTGGGGCGATTGCCGCAGAAATGCTGACAGAGTTACCGCCCGAACCATTTTGGTGGATGACAGGGATTTCCTCGGGCATGGCGTTGTATCGCCTGCCTGAGGCTTACCGTCTTTATAAGTTGCAGAAGGGGCTAAAAGGCAAACCATTGGCATTTATGGCGCTGTCGCATTTGCAAAAGGTAATGGCAAAACATCCTGATGAATTGTGGTTAGGTTATGGCTTTGAGTGGGACCAACGCCATGCTCAACGTGCTTATGAAATCTTAAAGCGGGATAAGCAAACCTTGCTTAACCAAGGTCACGGCAAGCAAATGGGTTCGACCTGGATTCATGGTGTCGAGCCCAAAGAAGAAGATGTGTACCAGCCAGTTGGTCACACTGAGGGGCATACCTTAATAGTTGGTACGACCGGTGCCGGAAAAACCCGATGCTTTGATGCGATGATCACTCAGGCCATTTTGCGCAATGAAGCCGTGATAATTATTGACCCCAAGGGAGACAAAGAACTTAAGGATAATGCACAGCGAGCCTGTATTGCCGCCGGTAGTCCTGAGCGCTTTGTGTATTTTCATCCGGGTTTTCCAGAGCATTCAGTACGTCTTAATCCCCTGAGAAACTTTAACCGGGGCACTGAAATTGCCAGCCGAATTGCGGCCTTAATCCCATCCGAAACCGGTGCTGATCCATTTAAAGCCTTTGGCCAAATGGCACTGAACAACATCGTGCAAGGTTTGTTGCTTACTTCACAGCGTCCTGATCTGAAAACACTGAGACGATTCTTGGAAGGTGGCCCAGAGGGCTTGGTAGTAAAAGCCGTCACAGCCTGGGGGGAGCAGGTGTATCCGAACTTTAGTGTGGAGATTAAACGCTTTACTGAAAAGGCCAATACCTTGGCTAAACAAGCCATGGCGATGCTGCTTTTTTACTACGAACGCATTCAGCCCGTTGCCGCCAATACTGATTTGGAAGGCCTTTTGAGCATGTTTGAACATGACAGAACCCACTATTCCAAGATGGTGGCTTCACTGATGCCGGTGCTCAATATGCTCACTTCAAGTGAACTTGGCCCACTGCTATCACCGATTGCAAACGATGTGAATGACAGCCGGTTAATTACGGATTCTGGCCGTATTATCAACAATGCCCAAGTGGCGTATATCGGCTTGGATTCATTGACTGACGCCATGGTTGGCAGCGCCATCGGTTCGTTGCTTTTATCCGATCTCACCGCCGTGGCCGGTGACCGCTATAACTATGGTGTTGATAATCGTCCCGTAAATATCTTCATCGATGAGGCGGCTGAAGTCGTCAACGATCCCTTCATTCAACTGCTCAACAAAGGCCGTGGCGCAAAAATGCGTTGCGTGATTGCTACTCAGACCTTTGCTGACTTTGCAGCTCGTACAGGCAGCGAAGCTAAGGCTCGCCAGGTGTTAGGTAACATCAACAACCTGATAGCCCTTCGGGTGATGGACGCCGAAACGCAGCAGTACATTACCGACAATCTGCCTAAGACTCGGTTGCAGTACATTATGCAAACTCAAGGTATGTCGTCCAACTCGGACAGCCCCGCGTTGTTTACCGGCAATCATGGCGAACGCTTGATGGAGGAAGAAGGCGATATGTTTCCACCGCAGTTATTAGGCCAGCTCCCCAACCTAGAGTACATCGCCAAGCTTTCAGGTGGCCGCGTGATCAAAGGCCGCATTCCTATTTTAACCAGCTCTACACAGGCAGCATAAGGAGTCTGTATGCATCATTCTGTCTGTCTGAAAATGACAACACTTACCAG