COG3505


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3505, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3505 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_84 FBDBKF_04025 201147 203294 -1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S1
1 group_84 FBDBKF_19855 14103 16199 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S1
2 group_84 EHELCC_06510 43809 45956 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S2
3 group_84 EHELCC_10580 160797 162893 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S2
4 group_84 NLDBIP_06835 43682 45829 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S4
5 group_84 NLDBIP_10925 139068 141164 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S4
6 group_84 LHKJJB_06370 7428 9575 1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S3
7 group_84 LHKJJB_10430 50364 52460 -1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S3
8 group_84 HKOGLL_04560 223812 225959 -1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S5
9 group_84 HKOGLL_16595 50373 52469 -1 traD type IV conjugative transfer system coupling protein TraD Morganella morganii S5
10 group_84 PMI_RS12235 2700609 2702429 -1 traD conjugative transfer system coupling protein TraD Proteus mirabilis HI4320
11 group_84 PMI_RS12780 2824071 2826218 -1 traD type IV conjugative transfer system coupling protein TraD Proteus mirabilis HI4320
12 group_4757 PMI_RS18595 12581 14434 1 type IV secretory system conjugative DNA transfer family protein Proteus mirabilis HI4320