Homologs in group_2490

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19855 FBDBKF_19855 100.0 Morganella morganii S1 traD type IV conjugative transfer system coupling protein TraD
EHELCC_10580 EHELCC_10580 100.0 Morganella morganii S2 traD type IV conjugative transfer system coupling protein TraD
NLDBIP_10925 NLDBIP_10925 100.0 Morganella morganii S4 traD type IV conjugative transfer system coupling protein TraD
LHKJJB_10430 LHKJJB_10430 100.0 Morganella morganii S3 traD type IV conjugative transfer system coupling protein TraD
PMI_RS12235 PMI_RS12235 35.8 Proteus mirabilis HI4320 traD conjugative transfer system coupling protein TraD

Distribution of the homologs in the orthogroup group_2490

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2490

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_16595
Feature type CDS
Gene traD
Product type IV conjugative transfer system coupling protein TraD
Location 50373 - 52469 (strand: -1)
Length 2097 (nucleotides) / 698 (amino acids)
In genomic island -

Contig

Accession ZDB_697
Length 66671 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2490
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF12696 TraM recognition site of TraD and TraG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3505 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12071 conjugal transfer pilus assembly protein TraD - -

Protein Sequence

MSDRYVIEAMLRPAVELNTAAVAAAAAYLCATAPWAVALTSAVSDVTAAGFALFSLIRLRQGLHILRYRRNIRRLRRYGVSSAAVPVSHQWLFLGRGFLWEQKHTQRLLDTLRPEVARYVNPSWLYQMARRAEQCSEHRFPSLCRFLARDSVLNPVRPLPPVGGHPALHGIEPDERDVMLSLTERVGHMLVLGTTRVGKTRLAELLITQDIQRGNVTIVFDPKGDADLLRRMFAESRRAGRAEEFYVFHLGRPEISARYNAVGRFGRITEVASRIAGQLSGEGNSAAFREFAWRFVNIIAQALVALGQRPDFMLIQRYVNNIGELYEIYAETCLAAHYPALWLRIENLAQILTERDIPRYMEGRSLRVVAIEQVLNSDEGKQFCEPVLDALRAAVRYDQKYYDKIVASLLPLLEKLTSGKMAQLISPDYRDMADPRPVFDWMQVIRKSGVVYVGLDALSDPEVAAAVGNAMFADLVSVAGHIYKFGVNDGLPGEDDQKIPISLHCDEFNELMGDEFIPLINKGGGAGVEVTAYTQTLPDIEARTGNAAKAAQVVGNFNSLVMLRARHTETAELLTRQLPEVDVYTKTLISGVTDIPETGTGSDFTSNTQDRVSTVRTPLVTAANIISLPKGQAFALLEGGKLWKIRIPLPAAEDDALMPDNLRQIADDMQRNYRTSDTWWSDTVLPETNMSYQYNDGE

Flanking regions ( +/- flanking 50bp)

CTTAAAATTTCACACTATCCTGTGCTGATCAGTGAACGCGGATTAACGCCATGAGTGACCGCTATGTGATTGAAGCGATGCTGCGCCCGGCGGTGGAGCTGAATACCGCTGCGGTGGCTGCTGCCGCAGCGTATCTCTGTGCCACTGCGCCCTGGGCGGTGGCGCTGACGTCTGCCGTCAGTGACGTCACCGCAGCCGGATTTGCATTGTTCTCTCTGATACGCCTGCGGCAGGGGCTACATATTCTGCGATACCGGCGCAATATCCGGCGTTTGCGGCGCTATGGGGTGAGCAGCGCGGCAGTGCCGGTCAGCCATCAATGGCTGTTCCTCGGCAGAGGTTTTCTGTGGGAGCAGAAACACACGCAGCGGCTGCTGGATACCCTGCGGCCGGAGGTTGCTCGGTATGTGAATCCGTCGTGGCTGTATCAGATGGCCCGGCGTGCTGAACAGTGTTCTGAGCACCGTTTTCCTTCGCTGTGCCGTTTTCTGGCCCGGGACTCCGTGCTGAATCCGGTTCGTCCGCTGCCACCAGTAGGCGGGCATCCGGCCTTGCACGGCATCGAACCGGATGAGCGCGATGTCATGCTCAGTCTGACTGAACGGGTTGGGCACATGCTGGTACTCGGCACGACGCGGGTCGGAAAAACCCGTCTGGCGGAACTGCTGATTACACAGGATATCCAGCGCGGTAACGTGACGATTGTCTTTGATCCGAAAGGGGATGCGGATCTGCTGAGACGGATGTTCGCCGAATCCCGCCGGGCGGGACGGGCAGAGGAGTTTTATGTTTTCCATCTCGGCAGGCCGGAAATCAGCGCCCGTTACAACGCGGTCGGTCGTTTCGGACGTATTACGGAAGTGGCGTCGCGCATCGCCGGGCAGCTCAGCGGTGAGGGTAATAGTGCCGCATTCCGTGAGTTCGCCTGGCGTTTTGTGAATATCATCGCACAGGCACTGGTCGCCCTCGGGCAGCGTCCGGATTTCATGCTGATCCAGCGCTATGTGAATAATATCGGCGAGCTGTATGAAATTTACGCCGAAACCTGCCTGGCAGCACACTATCCGGCACTGTGGCTTCGGATTGAAAATCTGGCGCAGATCCTGACAGAACGGGATATTCCCCGTTACATGGAGGGGCGTTCGCTGCGGGTTGTGGCGATTGAGCAGGTACTGAACAGCGATGAGGGAAAACAGTTCTGCGAACCGGTGCTTGATGCGCTGCGTGCGGCTGTTCGTTATGACCAGAAATATTACGACAAAATTGTTGCCAGCCTGCTGCCGTTGCTGGAGAAACTCACCTCCGGCAAAATGGCGCAGTTGATCTCCCCGGATTACCGGGATATGGCCGATCCGAGGCCGGTTTTTGACTGGATGCAGGTGATCCGCAAAAGCGGCGTTGTGTATGTCGGGCTGGATGCATTATCTGATCCGGAGGTAGCCGCAGCGGTCGGCAATGCGATGTTTGCTGATCTGGTCAGTGTGGCCGGGCATATCTACAAATTCGGGGTGAATGACGGGTTACCCGGCGAGGATGACCAGAAGATCCCGATCAGCCTGCACTGTGATGAATTCAATGAGCTGATGGGGGATGAGTTTATTCCGCTGATTAACAAAGGCGGCGGTGCGGGCGTGGAAGTGACCGCTTACACGCAGACGCTGCCGGATATCGAAGCCCGGACCGGTAATGCCGCAAAAGCCGCTCAGGTGGTAGGGAATTTCAATTCCCTGGTGATGCTGCGGGCACGGCATACCGAAACCGCCGAACTGCTCACCCGGCAACTGCCGGAAGTCGATGTGTATACCAAAACACTGATATCCGGCGTGACAGACATTCCGGAAACCGGCACCGGTAGTGATTTTACGTCCAATACCCAGGACCGCGTCAGTACCGTGCGTACACCGCTGGTGACGGCGGCCAATATCATCTCTCTGCCGAAAGGGCAGGCGTTTGCATTACTGGAGGGTGGCAAGTTGTGGAAGATCCGCATACCGTTGCCCGCAGCGGAAGACGACGCGCTGATGCCGGATAATCTTCGTCAGATAGCGGACGATATGCAGAGGAACTACCGGACCAGTGATACCTGGTGGTCTGATACTGTTTTACCGGAAACTAATATGTCTTACCAATATAACGATGGTGAGTGATGTCACATGTAAATACATCCTCTTTACCGGCACAAAAAAATAATCCTCCG