Orthogroup:group_84


Homologs in group_84

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04025 FBDBKF_04025 Morganella morganii S1 traD type IV conjugative transfer system coupling protein TraD
FBDBKF_19855 FBDBKF_19855 Morganella morganii S1 traD type IV conjugative transfer system coupling protein TraD
EHELCC_06510 EHELCC_06510 Morganella morganii S2 traD type IV conjugative transfer system coupling protein TraD
EHELCC_10580 EHELCC_10580 Morganella morganii S2 traD type IV conjugative transfer system coupling protein TraD
NLDBIP_06835 NLDBIP_06835 Morganella morganii S4 traD type IV conjugative transfer system coupling protein TraD
NLDBIP_10925 NLDBIP_10925 Morganella morganii S4 traD type IV conjugative transfer system coupling protein TraD
LHKJJB_06370 LHKJJB_06370 Morganella morganii S3 traD type IV conjugative transfer system coupling protein TraD
LHKJJB_10430 LHKJJB_10430 Morganella morganii S3 traD type IV conjugative transfer system coupling protein TraD
HKOGLL_04560 HKOGLL_04560 Morganella morganii S5 traD type IV conjugative transfer system coupling protein TraD
HKOGLL_16595 HKOGLL_16595 Morganella morganii S5 traD type IV conjugative transfer system coupling protein TraD
PMI_RS12235 PMI_RS12235 Proteus mirabilis HI4320 traD conjugative transfer system coupling protein TraD
PMI_RS12780 PMI_RS12780 Proteus mirabilis HI4320 traD type IV conjugative transfer system coupling protein TraD

Distribution of group_84 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_84 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_84

Orthogroup content: 12 members

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This page summarizes the annotation of all members of the orthologous group group_84.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 traD 12

Product

# Product Occurence
1 type IV conjugative transfer system coupling protein TraD 11
2 conjugative transfer system coupling protein TraD 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3505 12 U Intracellular trafficking, secretion, and vesicular transport (U) Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12071 12 conjugal transfer pilus assembly protein TraD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF10412 1 Type IV secretion-system coupling protein DNA-binding domain
PF12696 12 TraM recognition site of TraD and TraG

Protein length

Min length 606
Max length 715
Mean length (sd) 698.8 (30.4)
Median length 706.5

Protein length distribution